Jatropha Genome Database

JcCB0008691.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0008691.20 + phase: 0 
         (747 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003727 conserved hypothetical protein                          107   1e-22

>29739.m003727 conserved hypothetical protein
          Length = 870

 Score =  107 bits (54), Expect = 1e-22
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                       
Query: 376 ccagagcctcaaactgcacaaatgactattttctatgctggaaaagtaattgtgttcaat 435
           |||||| |||||| ||||||| ||||||||||||| |||||| |||| || ||||| |||
Sbjct: 409 ccagagtctcaaaatgcacaattgactattttctacgctggacaagtgatcgtgtttaat 468

                                             
Query: 436 gattttccagctgataaggctaaggaaattatgc 469
           |||||||||||||| |||||||||||| ||||||
Sbjct: 469 gattttccagctgacaaggctaaggaagttatgc 502



 Score =  101 bits (51), Expect = 6e-21
 Identities = 57/59 (96%)
 Strand = Plus / Plus

                                                                      
Query: 682 agtgatctgccaattgcaaggagagcttcccttcagcgatttttggagaagagaaaaga 740
           ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 700 agtgatctgccaattgcaaggagagcttcccttcaccggtttttggagaagagaaaaga 758



 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                       
Query: 69  cttctctcagacttgtagtttgttgagtcagtacttgaaggagagaggtagttttggaga 128
           |||||| ||||  |||||||||||||||||||| ||||| |||| ||| |||||||||||
Sbjct: 69  cttctcccagaagtgtagtttgttgagtcagtatttgaaagagaaaggcagttttggaga 128

                                   
Query: 129 tctcagtcttggtatgacatgcaa 152
           ||| ||||| || || ||||||||
Sbjct: 129 tcttagtctcggcatcacatgcaa 152



 Score = 67.9 bits (34), Expect = 8e-11
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                         
Query: 283 actaattttagatccatggacttgttccctcaacaagctggttttg 328
           ||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct: 292 actaattgtagatccatggacttattccctcaacaatctggttttg 337