Jatropha Genome Database

JcCB0008631.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0008631.30 + phase: 0 /partial
         (591 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28176.m000272 Selenoprotein T precursor, putative                     398   e-110

>28176.m000272 Selenoprotein T precursor, putative
          Length = 693

 Score =  398 bits (201), Expect = e-110
 Identities = 327/369 (88%)
 Strand = Plus / Plus

                                                                       
Query: 220 actggcactggcagcactgttaatattgatttctgtgcttcctgttcttatagaggaact 279
           ||||||| ||| | ||||||||||||||| ||||| ||||| |||||||| |||||||||
Sbjct: 226 actggcattggaaacactgttaatattgacttctgcgcttcttgttcttacagaggaact 285

                                                                       
Query: 280 gctataactatgaaaaacatgctggaaacacaatttcctgggattaatattgttttggca 339
           ||||| ||||||||||||||||||||| |||||| ||| ||||||||||| |||||||||
Sbjct: 286 gctatgactatgaaaaacatgctggaatcacaatatccagggattaatatcgttttggca 345

                                                                       
Query: 340 aattatcctccctcacttccaaagcgcttactgagcaaagtggttccagtttttcaattc 399
           || |||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||| 
Sbjct: 346 aactatcctccctcatttccaaagcgcttattgagcaaagttgttccagttgttcaattt 405

                                                                       
Query: 400 ggaatcattggactaatcatgggaggtgaacaaatctttccaaagttaggatttgcagtt 459
           |||||||||||| |||| | || ||||||||| || ||||||  ||||||||||||||||
Sbjct: 406 ggaatcattggattaataacggcaggtgaacacatttttccacggttaggatttgcagtt 465

                                                                       
Query: 460 ccaccttcttggtattactctctgcgtgcaaacagatttggaagtattgcaagcacttgg 519
           |||||| ||||||| |||||| | ||||||||||  |||||||||||||||||||| |||
Sbjct: 466 ccacctccttggtactactctttacgtgcaaacaagtttggaagtattgcaagcacctgg 525

                                                                       
Query: 520 ctttttggaaactttattcagtccttcctccagagttctggtgcatttgaagtatattgc 579
           || |||||||| || || || || |||||||||||||||||||| || |||||||||| |
Sbjct: 526 ctctttggaaatttcatccaatcgttcctccagagttctggtgctttcgaagtatatttc 585

                    
Query: 580 aatggtgaa 588
           |||||||||
Sbjct: 586 aatggtgaa 594



 Score = 77.8 bits (39), Expect = 7e-14
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                         
Query: 1  atggatcgatctcaatttctgctcttagggttaccaatctttctatt 47
          ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1  atggatcgatctcaattactgctattagggttaccaatctttctatt 47