Jatropha Genome Database

JcCB0008631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0008631.20 + phase: 0 /partial
         (735 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001180 transcription factor, putative                          172   2e-42

>29709.m001180 transcription factor, putative
          Length = 1473

 Score =  172 bits (87), Expect = 2e-42
 Identities = 222/267 (83%)
 Strand = Plus / Plus

                                                                        
Query: 391  tctggatccgggttggggagtagtagggttttaaggggttcagatgaaattgggaagaag 450
            |||||||| ||||||| |||| |||||||||| || || || ||||||||||| ||||||
Sbjct: 1171 tctggatctgggttggcgagtggtagggttttgagagggtctgatgaaattggaaagaag 1230

                                                                        
Query: 451  agggagagagaaccgatggaggagatggtggcggcagtcaaggtgttaggagatggtttt 510
            || ||||| || || |||||||||||||| || ||| | |||||||| |||||||| |||
Sbjct: 1231 agagagagggatccaatggaggagatggtagctgcaataaaggtgttgggagatggattt 1290

                                                                        
Query: 511  gtgagaatggagcagatgaagatggaaatggcaagggagatagagaccatgagaatggag 570
            ||||| |||||||||||||||||||| ||||| || ||||| || || ||||| ||||| 
Sbjct: 1291 gtgaggatggagcagatgaagatggagatggctagagagattgaaacaatgaggatggac 1350

                                                                        
Query: 571  atggagacgaaacgcacgaagatgattctggagtcgcaacagcatattgtagaggctttt 630
            ||||||| ||| |||||  ||||||| ||  | || || ||||  ||||| ||||| |||
Sbjct: 1351 atggagatgaagcgcactgagatgatactccactcacagcagcgaattgttgaggccttt 1410

                                       
Query: 631  gcaaaggctttctcggagaagaagaag 657
            || ||||| || || ||||||||||||
Sbjct: 1411 gctaaggccttttctgagaagaagaag 1437



 Score =  103 bits (52), Expect = 1e-21
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                       
Query: 94  gatgatgataatcaaggtttctatatggaaaatcacaggaatggaaatacaattatgaat 153
           ||||||| ||||||||||||||||||||||||||| |||||||||  ||   |  |||||
Sbjct: 883 gatgatgctaatcaaggtttctatatggaaaatcaaaggaatggaggtagcgtattgaat 942

                                                   
Query: 154 acaaggagcattcataagctttaccgtaatggaattgggg 193
           |||||||| |||||||||||||| |||||||| |||||||
Sbjct: 943 acaaggagtattcataagctttatcgtaatgggattgggg 982