Jatropha Genome Database

JcCB0007071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0007071.10 + phase: 0 /pseudo/partial
         (498 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30074.m001337 hypothetical protein                                    281   2e-75

>30074.m001337 hypothetical protein
          Length = 882

 Score =  281 bits (142), Expect = 2e-75
 Identities = 325/389 (83%), Gaps = 14/389 (3%)
 Strand = Plus / Plus

                                                                       
Query: 110 gagttgcaatcttttaagcaatccttggaatgatagggtgatgatacaaggaagaaccta 169
           |||||||||| || ||| |||||||||||||   ||||||||||| |||||||||| |||
Sbjct: 505 gagttgcaatgttctaatcaatccttggaatatcagggtgatgatgcaaggaagaaacta 564

                                                                       
Query: 170 atggccaagctggactctgccaaagctaagcttgaagaagctgtgcagatgaaatctaaa 229
           ||||||||| |||| | |||||||||||||||||| ||||  |  |  ||||||||| ||
Sbjct: 565 atggccaaggtggattgtgccaaagctaagcttgatgaagtcggacgaatgaaatctgaa 624

                                                                       
Query: 230 cttgtcaaagagaatagcatgttgtgtcattccaggtgaagcagtctattgaccaagtga 289
           ||||  |  ||||||||||              |||||||||| |||||||| |||||||
Sbjct: 625 cttgctactgagaatagca--------------aggtgaagcaatctattgagcaagtga 670

                                                                       
Query: 290 ggagcaaggaaaaagaatttaagcctgagcttctagtgatggacattatgactcttgaag 349
           || |||  | |||||||||||||||||||||||| |  ||||||| ||  || |||||||
Sbjct: 671 ggtgcagtgcaaaagaatttaagcctgagcttcttgcaatggacactacaacccttgaag 730

                                                                       
Query: 350 aggaatacaaagcccttttatctgataaagatggagaatttgaatatttgcaatctctgc 409
           ||||||| |||||||||||||||||||| | |||||||||||| |||||||||||||| |
Sbjct: 731 aggaatataaagcccttttatctgataaggctggagaatttgagtatttgcaatctcttc 790

                                                                       
Query: 410 aaggccagattgggaaactcaagggcatttctcatatgattaaatgtgcatgtggaacag 469
           ||| ||||||||  ||||||||||| |||||||||||||||||||||||||||||||  |
Sbjct: 791 aagaccagattgacaaactcaagggtatttctcatatgattaaatgtgcatgtggaatgg 850

                                        
Query: 470 aatacaaggtggcaatggagttttgtgca 498
           |||||||||||| ||||||  ||||||||
Sbjct: 851 aatacaaggtggaaatggatctttgtgca 879