Jatropha Genome Database

JcCB0006821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0006821.10 - phase: 0 /pseudo
         (512 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013886 histone deacetylase 1, 2 ,3, putative                   264   5e-70

>30147.m013886 histone deacetylase 1, 2 ,3, putative
          Length = 1407

 Score =  264 bits (133), Expect = 5e-70
 Identities = 337/405 (83%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatgcaaaccaccagcccaattcaaagcaatatcggcgtcaccacgattgagcttgac 60
           |||||| || |||||||||||||||||||||||||| || ||||| | ||| ||||| ||
Sbjct: 462 atgatgtaacccaccagcccaattcaaagcaatatcagcatcacctctattaagcttaac 403

                                                                       
Query: 61  ggccgccccaatcgaaccaccagcagacgcctgacaaaatccaaaaagcccatcaaaaac 120
            || || || || || |||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 402 agcagcacccattgacccaccagcagacgcttgacaaaaaccaaatagcccatcaaaaac 343

                                                                       
Query: 121 aggacaatcctccccaacattaaacctcttaagatgcctattatgcgcagggtcggacag 180
            |||||||| || ||||| || |||||||| | ||| |||||||| || ||||| |  ||
Sbjct: 342 tggacaatcttcaccaacgttgaacctctttaaatgtctattatgagccgggtccgcaag 283

                                                                       
Query: 181 agactctggagacacagaagaaaggaacttgacatagtcgtcggaatggaacttccggat 240
            || || ||||| || ||||| | ||| |  || || |||||||||||||| ||||||||
Sbjct: 282 tgattccggagagaccgaagacaagaaatccacgtaatcgtcggaatggaatttccggat 223

                                                                       
Query: 241 atcggtggtaccggcggggaaaggccggttgatctccatccgacgatggagagagtagtg 300
           |||| ||||   ||||||||| || |||||||| ||||| ||||| || ||||| |||||
Sbjct: 222 atcgatggtggaggcggggaatgggcggttgatttccatgcgacggtgaagagaatagtg 163

                                                                       
Query: 301 cacgatcaaattgtgtgccatgcgaatccggtgaggcttcattgggtgtccctggccata 360
            || || |||||||| |||||||| || || || || |||||||||||||| ||||||||
Sbjct: 162 aacaattaaattgtgagccatgcggattcgatggggtttcattgggtgtccttggccata 103

                                                        
Query: 361 atagtagtcgccgatcgtgggctcgtagaaataggttacgcggcg 405
           |||||||| |||||| ||||| ||||||||||||||||| |||||
Sbjct: 102 atagtagttgccgattgtgggttcgtagaaataggttactcggcg 58