Jatropha Genome Database
- JcCB0006421.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0006421.20 + phase: 0
(1284 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014172 translation initiation factor, putative 718 0.0
>30170.m014172 translation initiation factor, putative
Length = 1545
Score = 718 bits (362), Expect = 0.0
Identities = 835/995 (83%), Gaps = 15/995 (1%)
Strand = Plus / Plus
Query: 283 aataatgctgaagaaaaaagcgattgtgaaatgattgatgaatcaagagacaatagagca 342
||||||| ||||||||| ||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 256 aataatgtggaagaaaaaggcgattgtgaaataattgaggaatcaaaagataacagggcc 315
Query: 343 ttaattgataacaataaagctcaaagcctaactggcgatgacatagatgcaatgcggagg 402
|| | ||||| ||| |||||| | ||||||||| || |||||||||| |||||||||
Sbjct: 316 atactcgataataatttagctcagaccctaactggtgaagacatagatgaaatgcggaga 375
Query: 403 cagggtgcaaaaggtgaagaaataattgacgccctcattgccaatagtgctacatttgag 462
||||||||||||||||| ||||||||||| || ||||||||||| || | |||||||||
Sbjct: 376 cagggtgcaaaaggtgatgaaataattgaagctctcattgccaacagcacaacatttgag 435
Query: 463 aagaaaacattgttctcgcaagagaaatataggcttaagaagcnnnnnnngtatgcgcct 522
|||||||||| |||||| ||||||||||||||| ||||||| | |||||| |||
Sbjct: 436 aagaaaacatcgttctcccaagagaaatataggattaagaaacaaaagaagtatgcacct 495
Query: 523 agagtacttctgaggcgaccatttactcgaagcatatgtgagacatacttcaagaaatat 582
|| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 496 agggtacttctaaggcgaccatttactcgaagcatatgcgaggcatacttcaagaaatat 555
Query: 583 cctgctagaatcggctacctgcgaatcgatgcattgtctcttctactttcaatggcaaat 642
||||||||||| || | |||| || | |||||||||||||| ||||||||||||||||||
Sbjct: 556 cctgctagaattggattcctgagagtagatgcattgtctctgctactttcaatggcaaat 615
Query: 643 gttactgccaactccgatatactggtaatggatatggttggcggccttcttactggtgct 702
|||||||| || || ||| | || ||| ||||||||||||| ||||| |||||||||||
Sbjct: 616 gttactgcaaattctgatgtccttgtagtggatatggttggtggcctccttactggtgcc 675
Query: 703 gtagctgagcgtttaggaggtacaggttatgtttgcagtacatatcttggagatacacca 762
|||||||||||||||||||||| || ||||| |||| |||||||||||||| ||| |||
Sbjct: 676 atagctgagcgtttaggaggtactgggtatgtgtgcaatacatatcttggaggtacgcca 735
Query: 763 cattctgtcgatatagtgagaatgttcaacttcaacaacgacatttgcaaaaggattgtg 822
|||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 736 tattccacagatatagtgagaatgttcaacttcaataacgatgcttgcaaaaggattgtt 795
Query: 823 cgggcttctctaagtgacctctgtttagctcaaaatgaaacttctaaccaaagttgtgca 882
|| ||||| || | ||||||| ||| | ||||||||| | || || ||
Sbjct: 796 cgagcttcgctgaatgacctc-----agc-------ggaacttctaagccaatgagttca 843
Query: 883 catgaagatg---ctcccatggagtcaaatggtcaaacttcatcaatcagcatggcggaa 939
|||||||||| || | ||||| |||||| ||||| ||||||||||||||||| ||||
Sbjct: 844 catgaagatggccctagcgtggaggcaaatgatcaaaattcatcaatcagcatggaggaa 903
Query: 940 atgtccctctcatctgagcctgaggctgcagatatagatccagatcctactgcttctcct 999
|| || |||||||| | ||| ||||||| |||||| ||| |||||||||||||
Sbjct: 904 atccccgagtcatctgaaaatcaggttgcagatctagatcatgatgctactgcttctccc 963
Query: 1000 gcaagcaaaataagcaaagtgcataaagcaggagaaagggcaacagatgaagccttgaaa 1059
||||||||| ||||||| | |||||| |||||||||||| |||| ||||| |||||
Sbjct: 964 ataagcaaaatgagcaaagcccctaaagctggagaaagggcatcagaagaagcgctgaaa 1023
Query: 1060 ttgtggaaggaaaatgggttttcaagcctaataattgctgctccagatctggatccttgg 1119
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| |||||
Sbjct: 1024 ttgtggaaggaaaatggtttttcaagcctgattattgcagctccagatctggatgcttgg 1083
Query: 1120 agcttagtcaatgaaatcttgccacttctatcatattcagctccatttgctatctaccac 1179
||||||||||| | | | || ||||| ||||||||||| ||||||||||| | ||||
Sbjct: 1084 agcttagtcaaagttctgctacctcttctgtcatattcagccccatttgctattttccac 1143
Query: 1180 cagtatcttcagcctctagcaacatgcatgcacaatctacaacttgggaaaatggcaatt 1239
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1144 cagtatcttcagcctcttgcaacctgcatgcacaatctacagcttgggaaaatggcaatt 1203
Query: 1240 ggcttgcaaatttcagaaccttggctacgggaata 1274
|| |||||||||||||||||||||||||| |||||
Sbjct: 1204 ggtttgcaaatttcagaaccttggctacgtgaata 1238
Score = 182 bits (92), Expect = 3e-45
Identities = 200/236 (84%)
Strand = Plus / Plus
Query: 1 atgtcccagaataaccttgaatcggattcattgcaaaaccctagagtgacatgggaaggt 60
|||||||| ||||||||| | || |||| | ||| |||||||||||| ||||||||||||
Sbjct: 1 atgtcccaaaataaccttcagtccgatttaatgccaaaccctagagtaacatgggaaggt 60
Query: 61 tgcagcgtgctgctcgacattaacgatggcgaccgtctggttttttctcgtctcactcca 120
| |||||| |||||||||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 61 tacagcgtcttgctcgacatcaacgacggcgaccgtctcgttttcgctcgtctcactcca 120
Query: 121 ggctcgaatttgaaaattggcaacaaaaatttatctttgcggcccttgatcggttgtccc 180
||||||| ||| ||||||||||| ||||||| ||||||||||| ||||| || ||| |
Sbjct: 121 ggctcgactttaaaaattggcaataaaaattattctttgcggccgttgataggctgtaca 180
Query: 181 tttggttcactgtttcaaattgaaaacggaaaggaagggccctgtttatctagatt 236
|| ||||| ||||||||||||| ||||| |||||| || ||||||||| ||||
Sbjct: 181 ttcggttctttgtttcaaattgataacgggccggaaggtccttgtttatctcgatt 236