Jatropha Genome Database

JcCB0006421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0006421.10 - phase: 0 
         (636 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014173 nucleic acid binding protein, putative                  464   e-130

>30170.m014173 nucleic acid binding protein, putative
          Length = 1221

 Score =  464 bits (234), Expect = e-130
 Identities = 442/513 (86%), Gaps = 15/513 (2%)
 Strand = Plus / Plus

                                                                       
Query: 77  agcagaagcagaagcaaaagcaaccatcttcatgggaccaaataaaaaatctactaactt 136
           |||| ||||| || ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 71  agcaaaagcaaaaacaaaagcaaccatcttcatgggaccaaatcaagaacctactaactt 130

                                                                       
Query: 137 gcaagcaggtagaagattcaagcgtacacgacccgtcaaagaactctaac------gggt 190
           |||||||| | ||||  |||||||||||||| || ||||||||||||||       || |
Sbjct: 131 gcaagcagatcgaaggatcaagcgtacacgatccatcaaagaactctaataatattggat 190

                                                                       
Query: 191 attcaaagataggttcttcttgcagctctatatgcagtttcagggacgttgttcatggca 250
           | |||||  ||||||||||||| || || |||||||||||||||||| |||| |||||||
Sbjct: 191 actcaaaactaggttcttcttgtagttccatatgcagtttcagggacattgtacatggca 250

                                                                       
Query: 251 acacaagggttgttgatagagctgataactcaccagaaagtagcatagtcggtcaagaaa 310
           |||||||||||||| | ||||||||||| ||||| |||||||||| ||| ||||||||||
Sbjct: 251 acacaagggttgttcacagagctgataattcacctgaaagtagcacagtgggtcaagaaa 310

                                                                       
Query: 311 ctggactactgagtcgaaaacctgtgaatggatcatcatctcggtcgttgggaagttcag 370
           |||| ||||||||||||||| ||  |  |||||||||| ||||| |||||||  ||||||
Sbjct: 311 ctggtctactgagtcgaaaagctacgggtggatcatcaactcggacgttgggtggttcag 370

                                                                       
Query: 371 ggagatccaacagtggcgcaacatacacctct---------tcttcaagaggcatgcaat 421
           ||||||||||| | |||||||| ||| ||||          |||||||||||||||||||
Sbjct: 371 ggagatccaacggcggcgcaacttactcctcgcacgtatcatcttcaagaggcatgcaat 430

                                                                       
Query: 422 tcaggaaactttctggttgttatgaatgtcacatgattgttgaccctagcaggtacccaa 481
           ||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||| 
Sbjct: 431 tcaggaagctttctggctgttatgaatgtcacatgatcgttgatcctagcaggtacccag 490

                                                                       
Query: 482 ctccaaggactacaatatgcgcctgctcccattgtggagaggtcttccccaagtctgaaa 541
           ||||||||||||| |||||| ||||| |||| ||||||||||| ||||| ||| ||||||
Sbjct: 491 ctccaaggactacgatatgcacctgcgcccagtgtggagaggtattcccaaagactgaaa 550

                                            
Query: 542 gcttggagcttcaccaaaaagttcgccatgccg 574
           ||||||||||||| |||||||||||||||||||
Sbjct: 551 gcttggagcttcatcaaaaagttcgccatgccg 583