Jatropha Genome Database

JcCB0004891.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004891.20 + phase: 0 
         (735 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006255 DNA binding protein, putative                           149   3e-35

>29908.m006255 DNA binding protein, putative
          Length = 741

 Score =  149 bits (75), Expect = 3e-35
 Identities = 241/295 (81%), Gaps = 6/295 (2%)
 Strand = Plus / Plus

                                                                       
Query: 365 agtactggccgtttccgggagaatctgacgagacgattttgagttattgcgatggt---g 421
           |||||||||| ||||| |||||||| |||||| ||| ||| || || |||||||||   |
Sbjct: 344 agtactggccatttccaggagaatcagacgaggcgagtttaagctactgcgatggtcctg 403

                                                                       
Query: 422 aaaccaagacgatgagagtgagcgtttgttgtgaggataggcccgggttgaaccgggatt 481
           || | || || |||||||| || ||||| ||||| || ||||| |||||||||| ||| |
Sbjct: 404 aatcaaaaacaatgagagtcagtgtttgctgtgatgacaggccagggttgaaccaggagt 463

                                                                       
Query: 482 tgtcgcaggcgatccggtctgtcaaagcgagggcggttaaggctgagatgatgacggttg 541
           |  |  | |||||  |||| ||  | || ||||| |||  |||||| |||||||||||||
Sbjct: 464 tagctgacgcgattaggtcggttcatgccagggcagttcgggctgaaatgatgacggttg 523

                                                                       
Query: 542 gtgggcggactagaagtgtggtggtgttgcaatggggtagtggcggtggcggt---ggcg 598
           ||||||||||||  |||||||||||| ||||||||||||  |||||||| |||   || |
Sbjct: 524 gtgggcggactaagagtgtggtggtggtgcaatggggtaccggcggtggtggtcgcggtg 583

                                                                  
Query: 599 gagaggaggatgtaggagttttgagaagagcgttaaaggctgttgtggagaatcg 653
           ||||||||||||| |||||||||||||| ||| |||||  |||||||||||||||
Sbjct: 584 gagaggaggatgtgggagttttgagaagggcgataaagagtgttgtggagaatcg 638



 Score =  117 bits (59), Expect = 1e-25
 Identities = 158/191 (82%)
 Strand = Plus / Plus

                                                                       
Query: 115 tcatcatcaagattggaaaagaaatcaaccgaggcatgcaagagtcataaggaagctgaa 174
           ||||| |||||||  ||||||||||| || ||  |||||||||||||||| ||||| |||
Sbjct: 103 tcatcttcaagatcagaaaagaaatctacggacccatgcaagagtcataaagaagcagaa 162

                                                                       
Query: 175 aggcgacgtagacagcgtatcaacgctcatctctccacccttcgtactcttcttcctagc 234
           ||| | || || || |||||||| ||||| |||||||| || |||||||| || || |||
Sbjct: 163 aggaggcgcaggcaacgtatcaatgctcacctctccactctccgtactctcctccccagc 222

                                                                       
Query: 235 tccactaagacagacaaggcctcgttgctggcggaggtggttcatcacgtgaaggagcta 294
            |||| |||||||||||||||||  |||| || ||||| || || ||||| || ||||||
Sbjct: 223 accaccaagacagacaaggcctcactgctagcagaggtagtgcaccacgtcaaagagcta 282

                      
Query: 295 aggaagcaagc 305
           || ||||||||
Sbjct: 283 agaaagcaagc 293