Jatropha Genome Database

JcCB0004861.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004861.10 - phase: 0 /pseudo
         (1011 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013877 alpha-amylase, putative                                 113   2e-24
30170.m013878 pentatricopeptide repeat-containing protein, putative    64   2e-09

>30170.m013877 alpha-amylase, putative
          Length = 1269

 Score =  113 bits (57), Expect = 2e-24
 Identities = 126/149 (84%)
 Strand = Plus / Plus

                                                                       
Query: 148 agaggaatatggtcaatctttgaagggggaactcctggtgatcgacttgactggggacca 207
           |||||||||||||  ||||||||||| |||||| ||| |||||| |||||||||||||||
Sbjct: 358 agaggaatatggtgcatctttgaaggcggaactgctgatgatcgccttgactggggacca 417

                                                                       
Query: 208 tcgttcatttgcagtgatgacactctttactctgatggaaaaggaaaccctgacactgga 267
           || |||||||| || |||||||||   || |||||||| |||||||| ||||| || |||
Sbjct: 418 tccttcatttgtagagatgacactgcctattctgatggcaaaggaaatcctgatacagga 477

                                        
Query: 268 gcagactttaatcctgctccagacattga 296
           |  |||||| | ||||| || ||||||||
Sbjct: 478 ggtgactttgaacctgcacccgacattga 506



 Score = 63.9 bits (32), Expect = 2e-09
 Identities = 101/124 (81%)
 Strand = Plus / Plus

                                                                        
Query: 678  aatgctgtcacttttatcgacaatcatgatacagattccgcacaaaatcattggccgttc 737
            ||||| || |||||||| |||||||||||||||| |||  | ||| | | |||||| |||
Sbjct: 889  aatgcagtgacttttattgacaatcatgatacaggttctactcaacaactttggccattc 948

                                                                        
Query: 738  ccaccggacaaaatcatgcagggatatgtttatattctcacccatccagggatcccatca 797
            ||  | || ||| ||||||||||||||| ||||||||| || ||||| || || ||||| 
Sbjct: 949  ccgtcagataaagtcatgcagggatatgcttatattcttactcatcctggaattccatcc 1008

                
Query: 798  atat 801
            ||||
Sbjct: 1009 atat 1012


>30170.m013878 pentatricopeptide repeat-containing protein, putative
          Length = 3342

 Score = 63.9 bits (32), Expect = 2e-09
 Identities = 95/116 (81%)
 Strand = Plus / Plus

                                                                        
Query: 678  aatgctgtcacttttatcgacaatcatgatacagattccgcacaaaatcattggccgttc 737
            ||||| || |||||||| |||||||||||||||| |||  | ||| | |  ||||| |||
Sbjct: 907  aatgcagtgacttttattgacaatcatgatacaggttctacccaacaactatggccattc 966

                                                                    
Query: 738  ccaccggacaaaatcatgcagggatatgtttatattctcacccatccagggatccc 793
            ||| | || ||| ||||||| ||||||| ||| ||||| |||||||| ||||||||
Sbjct: 967  ccatcagataaagtcatgcaaggatatgcttacattcttacccatcctgggatccc 1022