Jatropha Genome Database

JcCB0004221.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0004221.20 + phase: 0 
         (348 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001324 60S acidic ribosomal protein P0, putative               186   6e-47

>29681.m001324 60S acidic ribosomal protein P0, putative
          Length = 972

 Score =  186 bits (94), Expect = 6e-47
 Identities = 241/290 (83%)
 Strand = Plus / Plus

                                                                       
Query: 40  tacgaccagaagctctgccgtcttctcgatgagtattcccagattctcgttgtgggggcc 99
           |||||| ||||||| |||||| |||| ||||||||||| ||||| || |||||||  || 
Sbjct: 40  tacgacaagaagctttgccgttttcttgatgagtattcacagatccttgttgtggcagct 99

                                                                       
Query: 100 gataatgtgggttccaaccagcttcaaagtataaggaggggtttacgcggtgactccata 159
           |||||||| || || ||||| || || ||||| |||  ||||||  | ||||| ||  | 
Sbjct: 100 gataatgtagggtctaaccaactccagagtattaggcagggtttgagaggtgattctgtt 159

                                                                       
Query: 160 gtgttgatgggtaagaacaccatgatgaagcgctccattaagctccatgctgagaaaact 219
           || || |||||||| ||||| |||||||| |||||  ||| ||| |||||||||||||||
Sbjct: 160 gttttaatgggtaaaaacacaatgatgaaacgctctgttaggcttcatgctgagaaaact 219

                                                                       
Query: 220 ggcaacgatgcttttaacagtctcgttcctttgcttgttggaaatgtcggtttggtcttt 279
           |||||  ||||||||   | |||| ||||||| |||||||| ||||| |||||| |||||
Sbjct: 220 ggcaataatgcttttctaaatctcattcctttacttgttggtaatgtaggtttgatcttt 279

                                                             
Query: 280 accaagggtgatttgaaggaagttagagaagagattgctaagtacaaggt 329
           || |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 280 actaagggtgagttaaaggaagttagagaagagattgctaagtacaaggt 329