Jatropha Genome Database

JcCB0003511.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0003511.10 - phase: 0 
         (834 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009098 RNA binding protein, putative                           305   2e-82

>30174.m009098 RNA binding protein, putative
          Length = 1068

 Score =  305 bits (154), Expect = 2e-82
 Identities = 352/418 (84%), Gaps = 15/418 (3%)
 Strand = Plus / Plus

                                                                       
Query: 37  agcagcaggagtagcagagcaatggagagtttgtctttggaaataaacaggtacccaaga 96
           |||||||| ||||| ||| ||||||||||| | ||||| ||||||||||  |||||||||
Sbjct: 31  agcagcagcagtagtagaacaatggagagtctttctttagaaataaacaaatacccaaga 90

                                                                       
Query: 97  gatctgctacagagatttatgtcaactgaaacgcagcaacaaaaaacgccatcaagtgaa 156
           |||||| |||| ||||||||||||| ||| |  || |||  ||||||       ||||||
Sbjct: 91  gatctgttacaaagatttatgtcaaatgacagtcaacaattaaaaact------agtgaa 144

                                                                       
Query: 157 ggagaagaa------acagaggagatagagctaaatctggggttgtcactaggaggtaga 210
           |||||||||      ||||| ||||| ||||||||||| ||||| ||| ||||||| |||
Sbjct: 145 ggagaagaagataatacagaagagattgagctaaatcttgggttatcattaggaggaaga 204

                                                                       
Query: 211 tttggggttgacaagtcagcaaagaaactaacgcgatcatcatcaatagctggttctata 270
           ||||| ||||||||| |  |||||||||||||  ||||||||||||||||||| || |||
Sbjct: 205 tttggagttgacaagacttcaaagaaactaacaagatcatcatcaatagctgggtcaata 264

                                                                       
Query: 271 ccattagcgagagagcatgatgcattcaatacaccgcctt---tatcgtatcctgtcctc 327
           ||| ||| |||||| ||||||||||||||||||| ||||    |||| |||||| | || 
Sbjct: 265 ccactagtgagagaccatgatgcattcaatacacagcctgcagtatcttatcctctactt 324

                                                                       
Query: 328 atgaggacatcttctttgccaacagaaacagaggaggagtggaggaagagaaaggaaatg 387
           || ||||||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||||
Sbjct: 325 atcaggacatcttctttgcctacagagacagaagaggaatggaggaagagaaaagaaatg 384

                                                                     
Query: 388 cagagtttgaggagattggaagcaaagagaaggagaagtgagaagcaaaagaatttga 445
           |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 385 cagactttgaggagaatggaagctaagagaaggagaagtgaaaagcaaaagaatttga 442



 Score =  101 bits (51), Expect = 7e-21
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                       
Query: 574 cagcagggttctcaagggtctgtggagtctcaaggggggagctcttctggtatgtcagaa 633
           ||||||||||| ||||||||||| ||||||||||| || ||||||||||| || ||||||
Sbjct: 574 cagcagggttcacaagggtctgttgagtctcaaggtggtagctcttctgggatttcagaa 633

                                  
Query: 634 ttggagagtaagcctattcaagg 656
            |||||||||||||| |||||||
Sbjct: 634 atggagagtaagcctgttcaagg 656