Jatropha Genome Database

JcCB0002291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0002291.10 - phase: 0 /partial
         (562 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

56072.m000045 conserved hypothetical protein                           74   1e-12

>56072.m000045 conserved hypothetical protein
          Length = 2247

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                      
Query: 1  atggcgctaaaattatttccagtgcaatttccaatcttttcaccactattaaacccgaat 60
          |||||||||||||| |||||||| ||||||||| | |||||||||| ||||||||| |||
Sbjct: 1  atggcgctaaaattctttccagttcaatttccagttttttcaccaccattaaaccctaat 60

           
Query: 61 c 61
          |
Sbjct: 61 c 61



 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 111/136 (81%)
 Strand = Plus / Plus

                                                                       
Query: 422 tcaaactcagtgaagacggtctctcttatgttgtcaatggcgcaccatttgagttcaagt 481
           |||||||||| |||||||||||||||| ||| ||  | ||||| ||||||||||| || |
Sbjct: 431 tcaaactcagcgaagacggtctctcttttgtcgttgacggcgcgccatttgagtttaaat 490

                                                                       
Query: 482 acagctacactgagtctccgaaggtcaagcctcttaaactgcgggagccgccgttctcgc 541
           |||||||||| ||| | || || | ||||||  ||||| | |||||  ||||||| ||||
Sbjct: 491 acagctacaccgagacgcctaaagccaagccgattaaattacgggaagcgccgttttcgc 550

                           
Query: 542 catttgggccgaccac 557
           | || ||||| |||||
Sbjct: 551 ccttcgggcccaccac 566



 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                       
Query: 100 cacttctcgcggtggaataacgcgaacgctagaaaattcaacgaacagcgacgcgcccag 159
           ||||||||||||||||| ||||| ||||||||  |||||||||| |  || ||||| |||
Sbjct: 103 cacttctcgcggtggaacaacgccaacgctagggaattcaacgaccgccgccgcgctcag 162

                                      
Query: 160 aaagaaatcgaggacgacatccgccgt 186
           |||||||| || || || |||||||||
Sbjct: 163 aaagaaatagaagaagatatccgccgt 189



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 264 caaatccataggcactccttcctctccttcaactccctctattccgggcaggaaatcgaa 323
           ||||||||||||||| || |||||||||||| |||| || || ||||| || ||||| ||
Sbjct: 264 caaatccataggcacaccatcctctccttcagctccttcaatcccgggtagaaaatccaa 323

                        
Query: 324 gtactccaaaccc 336
            ||||||||||||
Sbjct: 324 atactccaaaccc 336