Jatropha Genome Database

JcCB0001131.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0001131.10 - phase: 0 /pseudo
         (346 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008934 mads box protein, putative                              105   2e-22
30170.m013776 mads box protein, putative                               50   9e-06

>30174.m008934 mads box protein, putative
          Length = 735

 Score =  105 bits (53), Expect = 2e-22
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                       
Query: 26  agagaatagaaaacaagatcaaccgccaagttaccttctccaaaagaagaaatggtttgc 85
           |||| ||||||||||| ||||| |||||||| |||||||| ||||| || ||||| ||| 
Sbjct: 26  agaggatagaaaacaaaatcaatcgccaagtgaccttctctaaaaggaggaatggattgt 85

                                                                       
Query: 86  tcaaaaaagcctatgagctctcggttctttgtgatgctgaggtcgctctcatcatcttct 145
           | |||||||| |||||||| || || ||||||||||||||||| ||||| || |||||||
Sbjct: 86  tgaaaaaagcttatgagctgtctgtgctttgtgatgctgaggttgctcttattatcttct 145

            
Query: 146 c 146
           |
Sbjct: 146 c 146


>30170.m013776 mads box protein, putative
          Length = 693

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 73/89 (82%)
 Strand = Plus / Plus

                                                                       
Query: 52  caagttaccttctccaaaagaagaaatggtttgctcaaaaaagcctatgagctctcggtt 111
           ||||| |||||||| ||||| ||||||||  |  |||| ||||| ||||| || || |||
Sbjct: 52  caagtcaccttctctaaaaggagaaatgggcttatcaagaaagcttatgaactttctgtt 111

                                        
Query: 112 ctttgtgatgctgaggtcgctctcatcat 140
           || ||||||| ||| || |||||||||||
Sbjct: 112 ctctgtgatgttgatgtagctctcatcat 140