Jatropha Genome Database
- JcCB0001101.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0001101.10 + phase: 0 /partial
(843 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29945.m000086 nucleic acid binding protein, putative 733 0.0
27955.m000377 conserved hypothetical protein 163 2e-39
28128.m000156 nucleic acid binding protein, putative 54 1e-06
>29945.m000086 nucleic acid binding protein, putative
Length = 825
Score = 733 bits (370), Expect = 0.0
Identities = 709/822 (86%)
Strand = Plus / Plus
Query: 22 aatttttcacctgcaagaactctatcaccgcatataagaacaacccctgatgtcgaaagt 81
|||||||||||||||||| || | || || |||||||||||||| |||||||| || |||
Sbjct: 1 aatttttcacctgcaagagctttgtctccacatataagaacaactcctgatgttgatagt 60
Query: 82 ggtcagtatttgacagagcttttagaagagcaccagaagcttggaccctttgctcgagtc 141
||||||||||||||||| || |||||||| ||||||||| | ||||| || | ||
Sbjct: 61 ggtcagtatttgacagaactgttagaagaacaccagaagttgggacctttcaaccaggtt 120
Query: 142 ctacctatatgtagccgacttttgaatcaagagatattgcgagtttctggaatgctcccc 201
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct: 121 ctccctatatgtagccgacttttgaatcaagagatattaagagtttctggaatgattccc 180
Query: 202 aaccaggggttgagcgactttgatagaccacaacgcggaagcttaaaccttatggcttct 261
|||||||| || || || |||||||||| ||||| |||||||||| | |||||| |||
Sbjct: 181 aaccagggcttcagtgattttgatagactgcaacgtggaagcttaagtcctatggcatct 240
Query: 262 tcagatatactgccaaataatagaggaacgggcttccttgggtggaatggcctgcaaaat 321
||||| ||||| ||| |||||| ||||| || || | ||||||||||| |||| | |
Sbjct: 241 tcagaaatactagcaagtaataggggaacaagcatcatggggtggaatggactgccacaa 300
Query: 322 gaaagattaggatcacagggaatcaatatggactggcaagcagcaccagcaagcccaagt 381
|| ||||| ||| |||| || || ||| | |||||||||||||||||||| |||||||||
Sbjct: 301 gagagattgggagcacaagggatgaatgttgactggcaagcagcaccagcgagcccaagt 360
Query: 382 gcctatattgtgaagaaaattttgcgtttggatattcctgttgatagctatccaaatttc 441
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcctatattgtgaagaaaatcttgcgtttggatattcctgttgatagctatccaaatttc 420
Query: 442 aactttgtaggccgacttctgggccctaggggcaattccttgaaacgagtagaagcttct 501
|| ||||| || || ||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 421 aattttgttggtcggcttctgggcccaaggggcaattcattgaagcgagtggaagcttct 480
Query: 502 acaggctgtcgtgtctatatcagaggaaaaggttcaataaaagacccagaaaaggaagaa 561
|| || ||||| || ||||| |||||||||||||||||||||||||| || ||||||||
Sbjct: 481 acgggttgtcgcgtgtatattagaggaaaaggttcaataaaagaccctgagaaggaagat 540
Query: 562 tcattaaggggaagaccaggatatgagcatctgagtgatccactgcacatcttaattgag 621
||||||||||||||||| || ||||| || ||||||||||| |||||||| ||||||||
Sbjct: 541 tcattaaggggaagaccggggtatgaacacctgagtgatcctctgcacattttaattgaa 600
Query: 622 ggtgaactacctgtcaatattattgacatgcagttgagacaagcacaggagatcattgaa 681
| |||| |||||||||||||| | || |||| ||||||||||||| ||| |||||||||
Sbjct: 601 gctgaattacctgtcaatattgtggatatgcgattgagacaagcacgggaaatcattgaa 660
Query: 682 gaacttcttaaacctgtggatgagtcacaggatatctataagaggcaacagctaagagaa 741
||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 661 gaactgcttaaacctgtggacgagtcgcaggatatctataagagacaacagctgagagaa 720
Query: 742 ttagcaatgttgaattcaaactatagggaagaaagccctcgaccaagtggtagcatttca 801
|||||||||||||||||||| || |||||||| ||||||||||| ||||| || | ||
Sbjct: 721 ttagcaatgttgaattcaaattacagggaagagagccctcgaccgagtggcagtgtctct 780
Query: 802 cctttcacttcaagtggaatgaagcgtgccaaaaccggtcaa 843
|| ||||||||||| ||||||||||| ||||| || ||||||
Sbjct: 781 ccgttcacttcaagcggaatgaagcgagccaagactggtcaa 822
>27955.m000377 conserved hypothetical protein
Length = 2043
Score = 163 bits (82), Expect = 2e-39
Identities = 259/318 (81%)
Strand = Plus / Plus
Query: 390 tgtgaagaaaattttgcgtttggatattcctgttgatagctatccaaatttcaactttgt 449
|||||| | ||||||||||||||| ||||| || |||| ||||| |||||||| |||||
Sbjct: 390 tgtgaaaagaattttgcgtttggaaattccagtagatacttatcccaatttcaattttgt 449
Query: 450 aggccgacttctgggccctaggggcaattccttgaaacgagtagaagcttctacaggctg 509
|| ||||| |||||||||| || ||||| ||||||| || |||||| | || |||||
Sbjct: 450 ggggagacttttgggccctagaggtaattcactgaaacgggtggaagctaccaccggctg 509
Query: 510 tcgtgtctatatcagaggaaaaggttcaataaaagacccagaaaaggaagaatcattaag 569
||||| || || ||||| || || |||||||| |||||||| |||||||| || ||
Sbjct: 510 ccgtgtatacattagagggaaggggtcaataaaggacccagacaaggaagagaagttgag 569
Query: 570 gggaagaccaggatatgagcatctgagtgatccactgcacatcttaattgagggtgaact 629
|||||||||||| |||||||| |||| ||||||||| ||||||||||| || | ||| ||
Sbjct: 570 gggaagaccaggctatgagcacctgaatgatccactccacatcttaatcgaagctgatct 629
Query: 630 acctgtcaatattattgacatgcagttgagacaagcacaggagatcattgaagaacttct 689
||||| |||||| |||| ||| | ||||||| || ||||| || || | ||||||||
Sbjct: 630 acctgccaatatagttgaaatgaggctgagacaggcgcaggaaattataggggaacttct 689
Query: 690 taaacctgtggatgagtc 707
|||||||||||||||||
Sbjct: 690 caaacctgtggatgagtc 707
>28128.m000156 nucleic acid binding protein, putative
Length = 903
Score = 54.0 bits (27), Expect = 1e-06
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 694 cctgtggatgagtcacaggatatctataagaggcaacagctaagagaattagcaatgttg 753
||||||||||| || |||||| ||||||||| ||| |||||||| || |||| ||||||
Sbjct: 748 cctgtggatgaatctcaggatttctataagaagcagcagctaagggagctagcgatgttg 807
Query: 754 aat 756
|||
Sbjct: 808 aat 810