Jatropha Genome Database

JcCA0317741.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317741.40 - phase: 0 /partial
         (195 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013806 transcription factor, putative                          246   4e-65
30162.m001290 transcription factor, putative                           96   9e-20
29682.m000576 transcription factor, putative                           64   3e-10

>30170.m013806 transcription factor, putative
          Length = 1350

 Score =  246 bits (124), Expect = 4e-65
 Identities = 175/192 (91%)
 Strand = Plus / Plus

                                                                        
Query: 4    cgagttcaatcagatcctgctggacgcttggttataacaggtcaaccagagcagcttgac 63
            |||||||| || ||||||||||||||  ||||||||||||||||||||||||||||||| 
Sbjct: 1156 cgagttcagtctgatcctgctggacgtctggttataacaggtcaaccagagcagcttgat 1215

                                                                        
Query: 64   aatccttggggcataacgccctttaagaaggttgtaagcttaccttcaagaattgacccg 123
            ||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||| |||
Sbjct: 1216 aatccttggggtataacaccctttaagaaggtcataagcttaccttcaagaattgatccg 1275

                                                                        
Query: 124  cttcagacatctgctgttgttagccttcatggccgactatatgttcgcgtccctttcgag 183
            |||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||| || |||
Sbjct: 1276 cttcagacctctgcggttgtgagccttcatggccgactttatgttcgtgtcccatttgag 1335

                        
Query: 184  cgaggatcagct 195
            ||||||||||||
Sbjct: 1336 cgaggatcagct 1347


>30162.m001290 transcription factor, putative
          Length = 1548

 Score = 95.6 bits (48), Expect = 9e-20
 Identities = 123/148 (83%)
 Strand = Plus / Plus

                                                                        
Query: 10   caatcagatcctgctggacgcttggttataacaggtcaaccagagcagcttgacaatcct 69
            ||||| ||||| || ||||||||| ||||| | ||| | ||||||||  | || ||||| 
Sbjct: 1360 caatctgatccagcaggacgcttgattatatctggtaacccagagcaagtggataatccc 1419

                                                                        
Query: 70   tggggcataacgccctttaagaaggttgtaagcttaccttcaagaattgacccgcttcag 129
            |||||  | || |||||||| |||||||| ||||||||||| |||||||| |||| ||||
Sbjct: 1420 tggggtgtgacaccctttaaaaaggttgtcagcttaccttccagaattgatccgcatcag 1479

                                        
Query: 130  acatctgctgttgttagccttcatggcc 157
            ||||||||||| |||| ||| |||||||
Sbjct: 1480 acatctgctgtggttaccctgcatggcc 1507


>29682.m000576 transcription factor, putative
          Length = 1971

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 101/124 (81%)
 Strand = Plus / Plus

                                                                        
Query: 47   aaccagagcagcttgacaatccttggggcataacgccctttaagaaggttgtaagcttac 106
            |||| ||||| | ||| |||||||||||| | || ||||| || |||||||| |||||||
Sbjct: 1823 aacctgagcatcctgataatccttggggcgtcacacccttcaaaaaggttgtcagcttac 1882

                                                                        
Query: 107  cttcaagaattgacccgcttcagacatctgctgttgttagccttcatggccgactatatg 166
            | ||||| |||||||| | ||| || || |||||||| | ||| ||||| | ||||| ||
Sbjct: 1883 cgtcaaggattgacccacatcaaacttcagctgttgtcaccctgcatggacaactatttg 1942

                
Query: 167  ttcg 170
            ||||
Sbjct: 1943 ttcg 1946