Jatropha Genome Database
- JcCA0317741.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0317741.30 + phase: 0 /pseudo
(868 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014241 DNA binding protein, putative 458 e-128
29603.m000533 DNA binding protein, putative 72 6e-12
>30170.m014241 DNA binding protein, putative
Length = 870
Score = 458 bits (231), Expect = e-128
Identities = 541/640 (84%), Gaps = 12/640 (1%)
Strand = Plus / Plus
Query: 23 caggttctcgctatgttcatcaactcctcaggccagagctgcatcttcaaagaccatcac 82
|||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||
Sbjct: 38 caggttctcgctatgttcatcaactcctaagaccagaacttcatctccaaagaccatcat 97
Query: 83 ttccagtccaattatcccccgattctaaagacaacact---tcacctcaatccaaagacc 139
|||| ||| |||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 98 ttccttctcaaccatcctccgattctaaagacaacaacatctcacctcaatccaaagacc 157
Query: 140 acaagac---cactgacaccga--ca-ctgccgccaccagctctggtggtagttatcgac 193
| || | | ||||| |||| || | ||||||||||| ||||| | |||| |
Sbjct: 158 ataataagttctctgactccgaagcagccgccgccaccagttctggctcca---atcgcc 214
Query: 194 gccctcgaggccgtcctcctggctccaagaacaaacctaagcctccgattattgtaacac 253
||||| ||||||||||| ||||||||||||| ||||||||||| || |||||||||||||
Sbjct: 215 gccctagaggccgtcctgctggctccaagaataaacctaagccccctattattgtaacac 274
Query: 254 gagatagccccaatgctctccgatcccatgtgctcgaggtttccactggcagcgacatcg 313
| || ||||||||||| |||||||| || ||||| |||||||| |||||||||||||||
Sbjct: 275 gtgacagccccaatgccctccgatctcacgtgcttgaggtttctactggcagcgacatca 334
Query: 314 tggagaccgtatccaattatgcgagaaagcgaggaagaggagtctgtgtacttagcggta 373
|||| | ||||| | |||||| | ||| |||| |||||||| ||||| || ||||| |
Sbjct: 335 tggaaagtgtatctatttatgctcggaagagaggtagaggagtttgtgtgctcagcggaa 394
Query: 374 acgggactgttgccaatgttactctgcggcaaccagcgtctcctgctggcagtgtagtaa 433
||||||| ||||| |||||||| || | || |||||||||||||| || ||||| || |
Sbjct: 395 acgggacagttgctaatgttacacttagacagccagcgtctcctgcggggagtgtggtga 454
Query: 434 ctttgcaaggtaggtttgagattctttctctctctggaacggtgcttcctcctccagctc 493
||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct: 455 ctttgcacggtaggtttgagattctttcgctctctggaacggtgcttccgccaccagcgc 514
Query: 494 cgcctggggcggggggattgtcgatattcttgtctggtggacagggacaggttgttggtg 553
||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct: 515 cgcctggggcgggaggattgtccatatttttgtctggtggacagggacaggttgttggag 574
Query: 554 gaagcgtggtaggccctttattggcttctggaccggtggttttgatggctgcatccttcg 613
|||| |||||||| || || |||||||||| || |||||||||||||||||||| || |
Sbjct: 575 gaagtgtggtaggtcccttgatggcttctgggcctgtggttttgatggctgcatcttttg 634
Query: 614 caaatgctgtgtttgagcgtttgcctttagatgaggagga 653
| |||||||| ||||| ||||||||||| |||||||||||
Sbjct: 635 ctaatgctgtttttgaacgtttgcctttggatgaggagga 674
>29603.m000533 DNA binding protein, putative
Length = 906
Score = 71.9 bits (36), Expect = 6e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 196 cctcgaggccgtcctcctggctccaagaacaaacctaagcctccgattattgtaacacga 255
||||||||||| |||||||| ||||| || ||||| || ||||| ||| |||| ||||||
Sbjct: 247 cctcgaggccgacctcctggatccaaaaataaaccaaaacctccaatttttgtcacacga 306
Query: 256 gatagccccaatgctctccg 275
|| ||||| |||||||||||
Sbjct: 307 gacagccctaatgctctccg 326