Jatropha Genome Database

JcCA0317631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317631.20 + phase: 0 /pseudo/partial
         (306 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002982 dihydroxy-acid dehydratase, putative                    242   1e-63

>29904.m002982 dihydroxy-acid dehydratase, putative
          Length = 1848

 Score =  242 bits (122), Expect = 1e-63
 Identities = 260/306 (84%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttatcgcagccagggatggagatattcccatcgtaccattgagcactcatgacagtc 60
           ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| ||||| 
Sbjct: 548 ttcttgtcgcagccaggaatagagatattgccatcataccattgagcactcataacagtt 489

                                                                       
Query: 61  tcaatactatcagcaatcaaatctctactctgcaagctaaaacacatccccctagttccc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||| || || || |||
Sbjct: 488 tcaatactatcagcaatcaaatctctactttgcaagctaaaacacattcctctggtaccc 429

                                                                       
Query: 121 atggaaatagcatcacttacgccaatagtgttaaacctgaacccaaccatccctgcctct 180
           || |||||||||||||| || |||||||| |||||||| || |||||||||||||| |||
Sbjct: 428 atagaaatagcatcactaacaccaatagtattaaacctaaaaccaaccatccctgcgtct 369

                                                                       
Query: 181 ttcactccttccttaacagcctctgatagtctcagcaagtgcatgttgcaagtgtttcct 240
           |  || ||||  |||||||| || ||||| || | ||| ||||| ||||||||||| |||
Sbjct: 368 tgtacaccttgtttaacagcttcagataggcttaacaaatgcatattgcaagtgttccct 309

                                                                       
Query: 241 tcgtaccagaccgaggagatacctatctgaggcttactcaggtcttcatctgataaaccc 300
           || ||||| || || || || |||||||| || ||||| |  |||||||| ||||| || 
Sbjct: 308 tcataccaaactgatgaaatgcctatctggggtttacttaaatcttcatccgataagcca 249

                 
Query: 301 actcca 306
           ||||||
Sbjct: 248 actcca 243