Jatropha Genome Database

JcCA0317291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317291.10 - phase: 0 /pseudo/partial
         (850 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003739 conserved hypothetical protein                          351   4e-96
29992.m001418 conserved hypothetical protein                           58   9e-08

>29739.m003739 conserved hypothetical protein
          Length = 1473

 Score =  351 bits (177), Expect = 4e-96
 Identities = 405/481 (84%)
 Strand = Plus / Plus

                                                                       
Query: 370 agctcttccctggaggaacaagatgagaacaattctacaatgcttgtgcatacccaagcc 429
           |||||||  |||| ||||||||||||||| || | ||||||| || || |||  ||||||
Sbjct: 364 agctctttactgggggaacaagatgagaagaactttacaatgtttatgaataatcaagcc 423

                                                                       
Query: 430 tgtaattatgcaaaagggaaatgggtagtagatgatacccggcctttgtattctgggttt 489
           ||||||||  | ||||| |||||||| ||||||||||  | |||||| ||||||||||||
Sbjct: 424 tgtaattacaccaaaggaaaatgggtcgtagatgataatcagcctttatattctgggttt 483

                                                                       
Query: 490 ggctgtaagcaatggctggcacaaatgtgggcctgccggttgatgcaacgtacagacttt 549
           || ||||| |||||||| |||||||||||||| || |||||||||||||| ||||| |||
Sbjct: 484 ggttgtaaacaatggcttgcacaaatgtgggcttgtcggttgatgcaacgcacagatttt 543

                                                                       
Query: 550 gcttatgagaagctgcggtggcaaccaaacaattgccaaatggaagaatttgaaggggaa 609
            | ||||| | ||| |||||||||||||||||||| |||||||||| |||| |||||   
Sbjct: 544 tcctatgaaatgctacggtggcaaccaaacaattgtcaaatggaagcatttaaagggtct 603

                                                                       
Query: 610 aagttcttgaaaaggatgcaagacaagactctagcttttgttggagattcattgggcaga 669
            ||||||| ||||||||| |||  ||||| ||||||||||||||||||||| | ||||||
Sbjct: 604 gagttcttaaaaaggatggaagggaagacactagcttttgttggagattcactaggcaga 663

                                                                       
Query: 670 cagcaattcctgtccattatgtgtatgatcacagggggaaaggagaggcatgatgtcatt 729
           |||||||||| |||  | ||||| ||||||||||| ||||||||||  | ||||||  ||
Sbjct: 664 cagcaattccagtctctaatgtgcatgatcacaggtggaaaggagactcctgatgtactt 723

                                                                       
Query: 730 gatgtgggacatgaatatggatttgtcaaacctcacggtggtgtccgccctaatggatgg 789
           ||||||||    || |||||  ||||| ||||||  ||| | |||||||||||||| |||
Sbjct: 724 gatgtgggcagggagtatgggcttgtccaacctcggggtagcgtccgccctaatggctgg 783

                                                                       
Query: 790 gcatatcggtttccaagcactaatactactgtcctttattactggtcagcttgcctttgt 849
           || |||||||||||||| || || |||| ||||||||||||||||||||||||||| |||
Sbjct: 784 gcctatcggtttccaagtaccaacactagtgtcctttattactggtcagcttgcctctgt 843

            
Query: 850 g 850
           |
Sbjct: 844 g 844


>29992.m001418 conserved hypothetical protein
          Length = 1134

 Score = 58.0 bits (29), Expect = 9e-08
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 613 ttcttgaaaaggatgcaagacaagactctagcttttgttggagattcattgggcagacag 672
           ||||||||||||||||| ||||| ||  | || ||| ||||||||||||||||||| || 
Sbjct: 295 ttcttgaaaaggatgcaggacaaaaccattgcatttattggagattcattgggcaggcaa 354

                
Query: 673 caatt 677
           |||||
Sbjct: 355 caatt 359