Jatropha Genome Database

JcCA0317211.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0317211.20 + phase: 0 /pseudo
         (731 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29736.m002086 conserved hypothetical protein                          155   4e-37

>29736.m002086 conserved hypothetical protein
          Length = 717

 Score =  155 bits (78), Expect = 4e-37
 Identities = 195/234 (83%)
 Strand = Plus / Plus

                                                                       
Query: 135 tttcaaagaaaaacctgagggaagtaaccttaccttcgattgctctccctctggtgcttg 194
           |||||||||||||||    |||||||||||||| || ||||| ||||| || || |||||
Sbjct: 138 tttcaaagaaaaaccaagaggaagtaaccttacttttgattgttctccttccggcgcttg 197

                                                                       
Query: 195 cgttccctgccaatactctgagaagactgatgaaaagtatcgttgcagtgaaacgggtta 254
           |||||| ||||  ||||||||||||| ||||||||| |||||||||||||| || || ||
Sbjct: 198 cgttccttgcctttactctgagaagagtgatgaaaaatatcgttgcagtgagactggcta 257

                                                                       
Query: 255 tcgaatccccttaaaatgtatagaaactaaagacaacataaagaatggaaatgataaaaa 314
           ||| ||||| ||||||||| | |||| |||||| ||   |||| |||||||||| || ||
Sbjct: 258 tcgcatccctttaaaatgtgttgaaattaaagataatgcaaaggatggaaatgagaagaa 317

                                                                 
Query: 315 atctcaaaagactcgatctgttatagagatctctaatgaaaatgcaaatccaca 368
           |||||| || | |||||||| | ||||||||||| | |||| |||||| |||||
Sbjct: 318 atctcataatagtcgatctgctgtagagatctctcaggaaattgcaaaaccaca 371



 Score =  127 bits (64), Expect = 1e-28
 Identities = 130/152 (85%)
 Strand = Plus / Plus

                                                                       
Query: 580 gtgaatcatgatgcacaggggattattctttgtttgttcctaataagtggctcggttgtg 639
           |||||| ||| || |||||||||| |  | ||||||||||| |||||||| || ||||| 
Sbjct: 563 gtgaattatggtggacaggggattgtcttctgtttgttcctcataagtggttcagttgta 622

                                                                       
Query: 640 tacttccgaagaaagcagacggttaccatgtcaggagttgggggagggagaattcagatg 699
           |||||||||||||||||||| | |||||||||||||||||| ||||| || ||||| |||
Sbjct: 623 tacttccgaagaaagcagactgctaccatgtcaggagttggaggaggaaggattcaaatg 682

                                           
Query: 700 aattccagattttaactcaggttttcgagttt 731
           |  |||||||| ||||||||| |||| |||||
Sbjct: 683 agctccagattctaactcaggctttcaagttt 714