Jatropha Genome Database
- JcCA0316511.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0316511.10 + phase: 0
(2406 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29869.m001155 pentatricopeptide repeat-containing protein, putative 882 0.0
29869.m001154 pentatricopeptide repeat-containing protein, putative 107 3e-22
29585.m000598 pentatricopeptide repeat-containing protein, putative 54 4e-06
>29869.m001155 pentatricopeptide repeat-containing protein, putative
Length = 1455
Score = 882 bits (445), Expect = 0.0
Identities = 1192/1441 (82%)
Strand = Plus / Plus
Query: 964 gataacttgattccagatgccattacaatgataaatttgcttccatcttgttcaaaattc 1023
||||||||||| ||||||| ||||| |||||||||||||| |||||||||||| |||
Sbjct: 13 gataacttgatcccagatgttattaccatgataaatttgctcccatcttgttcacaatca 72
Query: 1024 ggaactctcttggaaggtaaatgtatccatggttatgccattaggaaaatgtttctccct 1083
||| |||||| | |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 73 ggagctctctcaaatggtaaatgtatccatggttatgccatcagaaaaatgtttctccca 132
Query: 1084 catttagtactcgaaactgctttagttgacatgtatggaaaatgtggacaattgaaattc 1143
|||||||| | ||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct: 133 catttagtgttggaaactgctctagttgacatgtatggaaaatgtggagaattggaatta 192
Query: 1144 gcagaatgtgtatttggtcgaataaatgagaagaacatggtatcgtggaatgccatcata 1203
||| || |||||||| ||| |||| |||| ||||| |||| || ||||| |||| ||
Sbjct: 193 gcaaaacgtgtatttagtcaaatagatgaaaagaatttggtgtcatggaacaccatgatt 252
Query: 1204 gctgcttatgtacagaatgggcggaatgaagaagctttggaattgttccattgccttcgg 1263
|||||||||||||| |||||| |||| ||||| ||||||||||| |||||||| ||
Sbjct: 253 gctgcttatgtacaaaatgggttgaatatggaagcattggaattgtttaattgcctttgg 312
Query: 1264 aatcagactctcaaaccagatgcggttacaattgcaagcatcctacctgcctatgctgaa 1323
||| || ||| ||||||||| || ||||||||||| |||||||| ||||| |||||||||
Sbjct: 313 aatgagcctcccaaaccagacgctgttacaattgccagcatcctgcctgcttatgctgaa 372
Query: 1324 ttagccacagtgagtgagtgtaaacagattcatgcttatatcacaaaattagagcttagc 1383
|| || | ||||||||||| |||||||||||| ||||||||| |||| ||||||||||
Sbjct: 373 ttggcatctgtgagtgagtgcaaacagattcattcttatatcataaaaatagagcttagt 432
Query: 1384 tcaaatactttcacctcaaatgcaattgtttacatgtatgcaaaatgtggtgatcttcag 1443
||| ||||| ||| ||||||||| ||||| |||||||||||||||||||| |||||| ||
Sbjct: 433 tcacatactatcatctcaaatgctattgtctacatgtatgcaaaatgtggggatcttaag 492
Query: 1444 actgcaagaagatattttgacagtatgtcatttaagaacttagtctcttggaatacgatg 1503
|| || ||| || ||||| |||||| | ||||||| |||| |||||||| || |||
Sbjct: 493 accgccagacgaatctttgatggtatgttgtgtaagaacgtagtttcttggaacacaatg 552
Query: 1504 attatggcttatgctattcatggattcggaacaatttctatccaattgttttccagaatg 1563
|| |||||||||| |||||||| || |||||||| || || || |||||||| ||||
Sbjct: 553 ataatggcttatggaattcatggttttggaacaatgtccattcagttgttttctgaaatg 612
Query: 1564 aaacaaaacggcatagaacctaatgaaagcacttttgtttctttattatcatcttgtagc 1623
| | |||| ||||| |||| |||||||||||||||||||| || |||||||| || ||
Sbjct: 613 agagaaaatggcatcaaacccaatgaaagcacttttgtttccttgttatcatcatgcagt 672
Query: 1624 atctctggtctggtcaatgaagggtgggaattgttcaattctatgaaaatggactataac 1683
|| ||||||| || |||||||||||||||| || |||||||||||| |||||||||
Sbjct: 673 attactggtctagttgatgaagggtgggaattctttaattctatgaaatcggactataat 732
Query: 1684 attgattatgggatagagcattatggttgtatggtggatcttcttggacgcactggaaat 1743
||||| ||||||||||||||| |||||| ||||| |||||||| || ||||||||||||
Sbjct: 733 attgaccatgggatagagcattttggttgcatggtagatcttctagggcgcactggaaat 792
Query: 1744 cttgatgcagccaagcagttcatcgaagagatgcctctggtcccaacagcccggatatgg 1803
||||||||||||| ||||||||| |||||| ||||| |||||||||||||| ||||||||
Sbjct: 793 cttgatgcagccatgcagttcattgaagagttgcctttggtcccaacagccaggatatgg 852
Query: 1804 ggctctttactaactgcaagtagaaacaataatgacattttctttgccgaatttgcagcc 1863
|| |||||||||||||||||||||||||| ||| |||| ||| |||||| |||||||
Sbjct: 853 ggttctttactaactgcaagtagaaacaagaataacatagccttagccgaacttgcagct 912
Query: 1864 aagcatattttgtcgcatgacaacgacaataccggttgctatgtcttgcttgctaatatg 1923
||||| ||||| || || | || ||||| || ||||||||||||||| |||| |||
Sbjct: 913 aagcacattttttccttggagcatgataatacaggctgctatgtcttgctttctaacatg 972
Query: 1924 tacgctgaagctggaaggtgggaagatgtagagcaaattaaacttgttatgaagaaaaaa 1983
|| |||||||| |||||||||||||||||||| || || ||| | ||||||||||||||
Sbjct: 973 tatgctgaagccggaaggtgggaagatgtagaacagatcaaaactcttatgaagaaaaaa 1032
Query: 1984 gggttggcaaagacggttgattgttgcacggttgagagtaaaggtaaaagtcagaagttc 2043
|| | | ||||| ||| ||| || | |||||||| || ||||||||||| ||||||
Sbjct: 1033 ggtatagtgaagacagttagttgctgtatggttgagacaaatggtaaaagtcacaagttc 1092
Query: 2044 atcaataataacaagtctcaccaacaagcatacatgatttatgatgtgttggatattatc 2103
|||||| | ||||||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 1093 atcaatcaagacaagtctcacagccaaataaacatgatttatgatgtcttggatattatc 1152
Query: 2104 ttgaagaagattggggaagatgtttatattcattctcttagtaagttcagaccagcagat 2163
|||||||||| || |||| | ||| | |||||| ||||||||||||||| | ||||
Sbjct: 1153 atgaagaagatcggcaaagacgcatatgtccattctgttagtaagttcagactggtagat 1212
Query: 2164 gtgataaaaaagaaaatgaaatcaccacagaatcacagtgtcaaactggctatttgcttc 2223
|||| || || | | || |||||| ||||| ||||| |||||||| || |||||
Sbjct: 1213 ttgatgaataaaaggaaaaattcaccagcaaatcatagtgtgaaactggccatctgcttt 1272
Query: 2224 ggcttgatctctacagcaattggaaaacctatcattattagaaagaacactagaatatgt 2283
|| || ||||||||||||||||| |||||| | |||| ||||||| |||||||||||||
Sbjct: 1273 gggttaatctctacagcaattgggaaacctgtagttatcagaaagaccactagaatatgt 1332
Query: 2284 aaagattgccatattgctgcaaagaagatttcaagagttactaaaagagaaattatagtg 2343
||||||| || || | ||| |||||||| ||| |||||||||||||||||| ||| |
Sbjct: 1333 gaagattgtcacatggttgccaagaagatatcactagttactaaaagagaaataataata 1392
Query: 2344 ggggattcaaaaatttttcaccacttcgaggatgggcgttgctcctgcggtgattattgg 2403
|| ||||| ||||| || ||||||||| | | ||| ||||||| ||| | |||||||||
Sbjct: 1393 ggagattctaaaatcttccaccacttcaatggtggcagttgctcatgccgcgattattgg 1452
Query: 2404 t 2404
|
Sbjct: 1453 t 1453
>29869.m001154 pentatricopeptide repeat-containing protein, putative
Length = 522
Score = 107 bits (54), Expect = 3e-22
Identities = 132/158 (83%)
Strand = Plus / Plus
Query: 437 aaaaggttcatgggaagttgattaagattggattggatcgggatatttatgtttgtaatt 496
||||| |||||| ||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 323 aaaagattcatgcaaagctgattaagattgggttggatttggatatttatgtttgtaatt 382
Query: 497 ctcttattgatatgtatttcaaatttgggtttgttgaagttgcagagaaggtttttgaag 556
|||||||||||||||||| ||||||| ||||| ||||||||| | |||||||
Sbjct: 383 gtcttattgatatgtattttgggcttgggttggttgaccatgcagagaatctgtttgaag 442
Query: 557 caatgcctcttagagacttggtttcttggaattgtatg 594
||||||| | |||||||| || |||||||||| ||||
Sbjct: 443 aaatgcctgtgagagacttagtctcttggaattctatg 480
Score = 97.6 bits (49), Expect = 3e-19
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 215 attctggtgctatggataatgcactctatctgtttgagaaaatgaaccaaccagatactt 274
|||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct: 221 attctggttccatgaataatgcactcgatctgtttgagaaattgaaccactcagatactt 280
Query: 275 atatatggaatgttattattagaggtttttctaataa 311
| ||||||||| || |||||||||| |||| ||||||
Sbjct: 281 acatatggaatcttgttattagaggattttgtaataa 317
>29585.m000598 pentatricopeptide repeat-containing protein, putative
Length = 1995
Score = 54.0 bits (27), Expect = 4e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 801 tcttattgatatgtatgctaaatgtgg 827
|||||||||||||||||||||||||||
Sbjct: 1674 tcttattgatatgtatgctaaatgtgg 1700