Jatropha Genome Database
- JcCA0316311.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0316311.30 - phase: 0 /pseudo/partial
(2191 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30152.m002413 cohesin subunit rad21, putative 371 e-101
>30152.m002413 cohesin subunit rad21, putative
Length = 2325
Score = 371 bits (187), Expect = e-101
Identities = 310/351 (88%)
Strand = Plus / Plus
Query: 128 atgttcccagaagttcccattgcgctgagaatgtcaggccaccttttgctaggtgttgtt 187
||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 133 atgtttccagaagttcccattgcgctgagaatgtcaggccatctcctgttaggtgttgtt 192
Query: 188 cggatatattcaaagaaagttgattatctttaccatgattgcaatgtgtttcttattgga 247
||||||||||| ||||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 193 cggatatattcgaagaaagttgatttcctttaccatgattgtaatgttgttcttgttggg 252
Query: 248 ttaagaaaagcttttgcttccatagaagttaatttgccagagaatgccacaacagcaaaa 307
|||||||| || ||| |||| ||||||||||||||||| |||||||| |||||||| |||
Sbjct: 253 ttaagaaaggcatttacttctatagaagttaatttgccggagaatgcaacaacagctaaa 312
Query: 308 tttgaatctgttactttgccccaaacatttgaccttgatgcgttgaatgtggagtttgat 367
||||||||||| |||||||| | |||||||||||||||||| ||| ||||||| |||||
Sbjct: 313 tttgaatctgtcactttgcctccaacatttgaccttgatgccttggatgtggactttgac 372
Query: 368 acatatcctgatgggtccccagatgatcatacgaagagtcaggaagaaataactcttcaa 427
| || || ||||||| || ||| |||||| || |||||| || |||||||| ||||||
Sbjct: 373 attgatgcttatgggtctccggataatcatatgaggagtcaagaggaaataacacttcaa 432
Query: 428 gatcaaattcctactgacagagatccttatgttgttatatcttttgatgag 478
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gatcagattcctactgacagagatccttatgttgttatatcttttgatgag 483
Score = 333 bits (168), Expect = 3e-90
Identities = 506/622 (81%), Gaps = 18/622 (2%)
Strand = Plus / Plus
Query: 1455 aactgaagaaattccagagcctacagttgcacaatctcctgcatcagaagctgaacctga 1514
||||||| | ||||||||||||| |||||||| || ||| | | |||| |||||||||
Sbjct: 1584 aactgaaaacattccagagcctatgtttgcacaaccttctgtacctgaagttgaacctga 1643
Query: 1515 tctagaaattgaacgtcttcggcatcatgagggccaagatggcaatcgtctgttacctga 1574
||||||||||||||||||||| || ||||| ||||| |||| ||| ||||||||||||
Sbjct: 1644 tctagaaattgaacgtcttcgacaacatgaaggccatgatgccaacattctgttacctga 1703
Query: 1575 ttctccagccagatttataccttctccaggaagatttgtatcttctccttttagaagaga 1634
|||| ||| |||||||||||||||| |||||||||||||||||||
Sbjct: 1704 a-ctcctgcc-----------ttctccaggaagatttccgccttctccttttagaagaga 1751
Query: 1635 tgatttcactcccaacacacnnnnnnntttaggatcagggtcggtaccttgggctcaaac 1694
||| |||||||||||| || |||||||||| | | || ||||||| |||
Sbjct: 1752 tgacttcactcccaactcaatgaaaagcttaggatcagaaacagcacattgggctggaac 1811
Query: 1695 tagtattgaaactgaagtgatgcctacaccaggtgtttcagcatctcctggcacttgcac 1754
||| || ||||||||| |||||||||||| | || ||||||| ||||||||| |||
Sbjct: 1812 aagtgctggaactgaagtattgcctacaccagatattgcagcatccactggcacttacac 1871
Query: 1755 tactgagccagaaacgccaaggacatttttggaggatcagtttgatcttgggcacactgg 1814
|||||| | ||||| || ||||| |||||||| || || |||||| |||||||||||
Sbjct: 1872 tactgatctggaaacacccaggacgtttttggaagagcaatttgatgcagggcacactgg 1931
Query: 1815 tctttcagatattcctgaatctatt------gcagaaacagaggacctttattttctgga 1868
||||||||||||||||||| | || |||||| |||||||||||||||| |||||
Sbjct: 1932 actttcagatattcctgaatttgttaatactgcagaagcagaggacctttatttcctgga 1991
Query: 1869 agcagacaataccccagctggatcccaaggcactcaaagcattgactcactgtctgtgag 1928
||||||||||| ||||||||| || | |||| ||||| ||||||| ||||||||||||||
Sbjct: 1992 agcagacaatagcccagctggttctccaggctctcaaggcattgattcactgtctgtgag 2051
Query: 1929 atcaagggctgtggctcaatatttaaaaagacattctctcagtaccccattatcaggaga 1988
| ||||||||||||||||||||||||||||| | |||| | |||||| |||||| |||
Sbjct: 2052 aacaagggctgtggctcaatatttaaaaagaaactctccgataaccccagtatcagaaga 2111
Query: 1989 ccagtctagagatctgagtctcaacaagatcttacagggaaaaacaagaaagttatgtgc 2048
|| ||| ||||||| |||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct: 2112 cctatctggagatctcagtctcaacaggatcttacaaggaaaaacaagaaaattatgtgc 2171
Query: 2049 tcggatgttctttgaaacactg 2070
||| ||||| ||||||||||||
Sbjct: 2172 tcgaatgttttttgaaacactg 2193
Score = 129 bits (65), Expect = 8e-29
Identities = 215/265 (81%)
Strand = Plus / Plus
Query: 724 gattttcgagatcctggccccagcaatcagactgaggttattaattcaatgcttaatgat 783
||||||| ||| ||||| || || ||||||||||||||| |||||||| |||| ||
Sbjct: 745 gattttcaagagcctggtccaagtaatcagactgaggttcttaattcagcaattaacaat 804
Query: 784 gacaattccccaccagaaattgaaatcatgcgtgatcctgtccagggttttagtccagaa 843
||||||| ||| |||||||||||| | ||||||||| ||| | | ||||||| | |||
Sbjct: 805 gacaatttccctccagaaattgaagttttgcgtgatcatgttgatgtttttagttcggaa 864
Query: 844 aaacttccttcaggttttccagatcaccaaaatgatgcctttcaacctaccacatctttt 903
|| |||||| ||| ||| | |||| ||||||||||| | | |||| | | ||||||
Sbjct: 865 aaccttcctccagtgtttacccatcagcaaaatgatgcatctgaaccaaatatatcttta 924
Query: 904 gaccaaggtttgaatgagaaggaaataccttctccatttaaggaagatgcgttgccttct 963
||||||||||||||||||||| ||| || |||||||||||||| |||| | ||||||
Sbjct: 925 gaccaaggtttgaatgagaagaaaactccctctccatttaaggaggatgtcataccttct 984
Query: 964 ggagggcagccttcaccatttcagc 988
||||||||| |||||||||||||||
Sbjct: 985 ggagggcagtcttcaccatttcagc 1009
Score = 129 bits (65), Expect = 8e-29
Identities = 95/105 (90%)
Strand = Plus / Plus
Query: 1041 atcacctgaacttgccatacgttcaaccccacctgttcaacagccaagaccaaggcagag 1100
||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||| ||
Sbjct: 1086 atcacctgaacttgccatacgttcaacgccagctgttcagcagccaagacctaggacaag 1145
Query: 1101 gaagagaaagcatttctttgatgagtccacagtgttaactaataa 1145
|||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 1146 aaagagaaagcatttctttgatgaggccacagtgttaaccaataa 1190
Score = 58.0 bits (29), Expect = 2e-07
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 1290 aaaatctcatttaactcttgaaagggaagctactccagagcctagggtt 1338
|||| ||||||| |||||||||||||||| ||| |||||||| ||||||
Sbjct: 1374 aaaacctcatttgactcttgaaagggaagttacaccagagcccagggtt 1422
Score = 54.0 bits (27), Expect = 4e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1149 gaggaaggaaatcccttccactgctttgggcatatggaa 1187
||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 1236 gaggagggaaatcccttctactgctttgggtatatggaa 1274