Jatropha Genome Database

JcCA0316161.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0316161.20 - phase: 0 
         (615 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014357 conserved hypothetical protein                          111   5e-24

>30170.m014357 conserved hypothetical protein
          Length = 621

 Score =  111 bits (56), Expect = 5e-24
 Identities = 146/176 (82%)
 Strand = Plus / Plus

                                                                       
Query: 440 aaagcttgaggaaatcggtgtctgctgcttattctgtagagagaagcgcgaatcctcggt 499
           |||| ||||| ||||| |||||||||||||| ||||| ||||| || | ||  ||| |||
Sbjct: 446 aaagtttgagaaaatcagtgtctgctgcttactctgtggagagcagtgagatccctaggt 505

                                                                       
Query: 500 attcattgagaagcttgagcaaagagaacaagaaacctcctctgcctttcaatgttgaga 559
           |||| |||||||| ||||| || ||||| ||||| |||||| ||||| |||||  |||||
Sbjct: 506 attctttgagaagtttgagtaaggagaataagaagcctcctttgcctgtcaattatgaga 565

                                                                   
Query: 560 aatctgtgtgtccaagtgaaaggaaagttgggacccgaagggttaggaaaatctga 615
           |||||||   | ||| ||||| |||||||||| | ||||||||||||||| |||||
Sbjct: 566 aatctgttcttgcaaatgaaaagaaagttggggctcgaagggttaggaaagtctga 621



 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 272 ctaactcgagtcccctgtttgagagaggaaggttttatgaggtgtactctgc 323
           ||||||| |||||  | ||||||||||||||||||||||| || ||||||||
Sbjct: 275 ctaactcaagtcctttatttgagagaggaaggttttatgatgtttactctgc 326