Jatropha Genome Database
- JcCA0316141.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0316141.30 - phase: 1 /partial
(731 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29235.m000235 1-deoxyxylulose-5-phosphate synthase, putative 882 0.0
27506.m000052 1-deoxyxylulose-5-phosphate synthase, putative 143 2e-33
29726.m003963 1-deoxyxylulose-5-phosphate synthase, putative 86 3e-16
>29235.m000235 1-deoxyxylulose-5-phosphate synthase, putative
Length = 2145
Score = 882 bits (445), Expect = 0.0
Identities = 646/713 (90%)
Strand = Plus / Plus
Query: 19 aggtggtgcatgatgtggaccttcaaaagttacctgtccgctttgctttagatcgagctg 78
||||||| || ||||| ||||| ||||| ||||| ||||| ||||| | ||||||||||
Sbjct: 1430 aggtggtacacgatgtcgacctgcaaaaattaccagtccgttttgccatggatcgagctg 1489
Query: 79 gtttggttggtgcagatggacccacccactgtggagcgtttgatatcacatacatggctt 138
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 1490 gtttggtaggtgcagatggacccacccattgtggagcatttgatatcacatacatggctt 1549
Query: 139 gcttgcccaacatggtggtcatggctccatctgatgaagctgagctagtgcacatggttg 198
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1550 gcttgcccaacatggtggtcatggctccatctgatgaagctgagctgatgcacatggttg 1609
Query: 199 ccactgcagcggccatagatgacagacccagttgcttcaggttcccaaggggcaatggaa 258
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1610 ccaccgcagcagccatagacgacagacccagttgcttcaggttcccaaggggcaatggga 1669
Query: 259 ttggagcagctcttccacctaataataaaggaaccccacttgagattggaaaggggagaa 318
|||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1670 ttggagtagctcttcctcctaataataaaggaactacacttgagattggaaaggggagaa 1729
Query: 319 tactgatggaaggaaatagcgttgcgattttgggatatggttctatagttcgacaatgtg 378
||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 1730 tactgatggaaggaaatagagttgcaattttgggatatggttcaatagttcaacaatgtg 1789
Query: 379 tagaagctgcaaacaaactcagaacccgagacatttctgtgacagtagctgatgcaagat 438
|||||||||| | ||||||||| ||||||||| ||| ||||| |||||||||||||
Sbjct: 1790 tagaagctgctggaatgctcagaaccagagacatttatgtaacagttgctgatgcaagat 1849
Query: 439 tttgcaaacccttagatacagatcttatcaggcgattgactagggagcatgaaatcctaa 498
| |||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 1850 tctgcaaaccattagatacagatcttatcaggcgattggctaaggagcatgaattcctaa 1909
Query: 499 ttacagtggaagagggttctattggcggtttctgctcccatgtatctcactttctgagtt 558
||||||||||||||||||||||||| ||||| || || |||||||| ||||| ||||||
Sbjct: 1910 ttacagtggaagagggttctattggaggtttttgttcgcatgtatcccacttcctgagtc 1969
Query: 559 taagtggtattctggatggagatctaaagttaagatcaatggttcttcctgacagatata 618
||| || |||||||||||| || ||||| |||||||||||||||||||||||||| |
Sbjct: 1970 taaacggaattctggatggaccgctcaagttgagatcaatggttcttcctgacagataca 2029
Query: 619 ttgaccatggatcgcctcaagatcagattcaagaggcagggctttcctcaaaccatattg 678
||||||||||||| |||| ||| ||||||||||| |||||||| || |||||||||||||
Sbjct: 2030 ttgaccatggatcacctctagaccagattcaagaagcagggctctcgtcaaaccatattg 2089
Query: 679 ctgccacggtcttatctctcttagggaagccaaaagaagctcttcagttcaaa 731
|||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2090 ctgcaacagtcttatctctcttggggaagccaaaagaagctcttcagttcaaa 2142
>27506.m000052 1-deoxyxylulose-5-phosphate synthase, putative
Length = 2187
Score = 143 bits (72), Expect = 2e-33
Identities = 246/304 (80%)
Strand = Plus / Plus
Query: 19 aggtggtgcatgatgtggaccttcaaaagttacctgtccgctttgctttagatcgagctg 78
||||||| |||||||| ||||| |||||| | |||||| | ||||| |||| | ||||
Sbjct: 1466 aggtggttcatgatgtagacctacaaaagcttcctgtcagatttgcaatagacagggctg 1525
Query: 79 gtttggttggtgcagatggacccacccactgtggagcgtttgatatcacatacatggctt 138
|| | |||||||||||||| ||||| || |||||||| |||||| | || ||||||||||
Sbjct: 1526 gtcttgttggtgcagatggtcccactcattgtggagcttttgatgttacttacatggctt 1585
Query: 139 gcttgcccaacatggtggtcatggctccatctgatgaagctgagctagtgcacatggttg 198
| || || |||||||| ||||||||||| || ||||| |||| || |||||||||| |
Sbjct: 1586 gtttacctaacatggtagtcatggctccttcagatgagactgaacttatgcacatggtgg 1645
Query: 199 ccactgcagcggccatagatgacagacccagttgcttcaggttcccaaggggcaatggaa 258
|||| || || ||||| ||||| || ||||||||||| |||| |||||| || ||||| |
Sbjct: 1646 ccacagctgcagccattgatgataggcccagttgctttaggtacccaagaggaaatggca 1705
Query: 259 ttggagcagctcttccacctaataataaaggaaccccacttgagattggaaaggggagaa 318
|||| | ||||||||| ||||| ||||| || || | |||||||| ||||| ||||
Sbjct: 1706 ttggcaccattcttccaccaaataacaaaggcacacctttagagattggtaagggaagaa 1765
Query: 319 tact 322
||||
Sbjct: 1766 tact 1769
>29726.m003963 1-deoxyxylulose-5-phosphate synthase, putative
Length = 2163
Score = 85.7 bits (43), Expect = 3e-16
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 82 tggttggtgcagatggacccacccactgtggagcgtttgatatcacatacatggcttgct 141
||||||| |||||||| || || ||||||||||| |||||| |||| | ||||| |||
Sbjct: 1505 tggttggagcagatggtccaacacactgtggagcttttgatgtcacttttatggcatgcc 1564
Query: 142 tgcccaacatggtggtcatggctccatctgatgaagctgagctagtgcacatggttgcca 201
| || ||||||||||| |||||||| |||||||| || || ||| | ||||||||||| |
Sbjct: 1565 tccctaacatggtggtgatggctccttctgatgaggcagaactatttcacatggttgcta 1624
Query: 202 ctgcagcggccatagatga 220
|||| || || ||||||||
Sbjct: 1625 ctgctgcagcaatagatga 1643