Jatropha Genome Database
- JcCA0316141.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0316141.10 + phase: 0 /pseudo/partial
(1953 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29235.m000238 nucleic acid binding protein, putative 400 e-110
>29235.m000238 nucleic acid binding protein, putative
Length = 2067
Score = 400 bits (202), Expect = e-110
Identities = 490/586 (83%)
Strand = Plus / Plus
Query: 270 ggttattgtggacttttggcagataggacacagattggtgccgtgatgggtagagcaggg 329
||||||||||| |||||||| |||| |||||| ||||||||||| | || | || ||||
Sbjct: 430 ggttattgtggccttttggctgatacgacacaaattggtgccgttgttggaaaaggaggg 489
Query: 330 aagaatgtagtgagaatgaggagagagagcggggcccagatcagaatcctaccggccccg 389
|||||||| ||||||||||||||||||| ||||| | || ||| |||| || ||||
Sbjct: 490 aagaatgtgttgagaatgaggagagagagtggggcggatattagattccttccaccccca 549
Query: 390 cactgcgctacaaaagatgatgaattgattcagattacaggtaccattttggctgtaaag 449
|| || ||| | || |||||| || ||||||||||||||||| |||||||||| || ||
Sbjct: 550 cattgtgcttctaaggatgatcaactgattcagattacaggttccattttggcagtgaaa 609
Query: 450 aaagctctgattgcagtaactgagtgtcttcatgattgtccgccgtatgacagaggtcca 509
||||| ||| |||| || ||||| |||||||| |||||||| || ||||| | || |||
Sbjct: 610 aaagcactggttgctgttactgattgtcttcacgattgtccaccatatgaaaaagaccca 669
Query: 510 atgcttttgaccagatctgttgagagatcttcctatatggcctcttctgacccacatgca 569
| |||||||| ||| | |||||||| |||| || ||||||||||||| |||||||||
Sbjct: 670 acgcttttgatgagaccacttgagagagcttcacatttggcctcttctgatccacatgca 729
Query: 570 gaattcttcccacatcttagttcgttgttgccacctttgaccgaaaatactgtaaatact 629
||||||||||||||||||||||| |||| |||||||| | | |||| ||| || | |
Sbjct: 730 gaattcttcccacatcttagttcactgttaccacctttaagtggaaattctggaacttcc 789
Query: 630 cattcattatcctcagatgctggtggaaaccccaaccaggatgtgaaggttacacaacaa 689
||| |||||||||| |||||||||| | ||||||||||||||| | | | || |||
Sbjct: 790 catccattatcctcggatgctggtgaagaccccaaccaggatgcggaagcggtacgacac 849
Query: 690 gaagtttcattcaggctgctttgctccaatggtgcagctgggagcataattggaaagaaa 749
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 850 gaagtgtcattcaggctgctttgctccaatggtgcagctgggagcattattggcaagaaa 909
Query: 750 gggaccattgtcagaactctacagaatgaatcgggtgcttctattatgtttgctgctcca 809
|| |||||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||||
Sbjct: 910 ggaaccattgtcagaaccctacaaaatgaaacaggtgcttctatcatgtttgcagctcca 969
Query: 810 atcactatgtctggtgaacgtttagtcaccatttctgccttggaga 855
|| ||||||||||||||||| |||| ||||||||||| |||||||
Sbjct: 970 atgtctatgtctggtgaacgtgtagttaccatttctgcgttggaga 1015
Score = 200 bits (101), Expect = 2e-50
Identities = 243/289 (84%), Gaps = 6/289 (2%)
Strand = Plus / Plus
Query: 853 agatctattgagcatgaaattgaaaaggggcatccatcagtcttgattgagggtacttct 912
|||||| |||| ||||| |||||||||||||||||||||| |||||||||||| || |
Sbjct: 1069 agatctgttgaacatgacattgaaaaggggcatccatcaggtttgattgagggtgctaca 1128
Query: 913 gtaactgcacggctactggttgaatcagatgtagtttgttgcttgaatgggaatggtgg- 971
||||||||| |||| || || | |||||||| ||||||||||||| || ||| |||||
Sbjct: 1129 gtaactgcaaggctcctagtggcatcagatgctgtttgttgcttgattgagaagggtggc 1188
Query: 972 ---gg--agatagattccaaattcacagaaggaagtggtgctgatatacagatattagaa 1026
|| | |||||||| || | | ||||| ||||||||||||||||| |||||||||
Sbjct: 1189 actggcaatatagattctgaaatgatagaagtaagtggtgctgatatacggatattagat 1248
Query: 1027 ggggaacagaactcggattgcgcttcagaaaatgatgtagtaatagagatcacaggcgag 1086
|||||||||| | || ||| ||||||||| |||||||||||||||||||||| || |||
Sbjct: 1249 ggggaacagatcatggcttgtgcttcagaagatgatgtagtaatagagatcactggtgag 1308
Query: 1087 tataaaaatgtacagaatgctctgtttctagttactcgaaaactgaggg 1135
|||||||||||||||||||| |||||| | |||||| | ||||||||||
Sbjct: 1309 tataaaaatgtacagaatgcactgtttatggttactgggaaactgaggg 1357
Score = 170 bits (86), Expect = 2e-41
Identities = 194/230 (84%)
Strand = Plus / Plus
Query: 1245 tgattctgatcgagaagctagtttgactagtgcaatggatcagcttggattctccaacag 1304
||||||||||| |||| |||||||||| || |||||| |||||||||||||||||| |||
Sbjct: 1368 tgattctgatcaagaaactagtttgacaagagcaatgaatcagcttggattctccagcag 1427
Query: 1305 cttatgtaatgcttcttcactaagactgcagttaacacagaagtttggaaaagggagttc 1364
||| |||||||||| || |||||||||| | ||||||||||| || || | | |
Sbjct: 1428 cttcaacaatgcttctttaccgagactgcagtcagcacagaagtttcaaagagagcatac 1487
Query: 1365 agcagccattaaaaataatgaaaacagctcaacagcatttgttgggggttcagaacttga 1424
| |||| ||||||||| | || ||||||| | |||||||| ||||||||||| ||||||
Sbjct: 1488 aacagcaattaaaaatcaagagaacagcttacaagcatttggtgggggttcaggacttga 1547
Query: 1425 aagatccctgcactttcttttgcccaaggaggtgcttaatgaggtaggtg 1474
||| || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 1548 aaggtctctgcacttccttttgcccaaggaggtacttaatgaggtaggtg 1597
Score = 135 bits (68), Expect = 1e-30
Identities = 167/200 (83%)
Strand = Plus / Plus
Query: 1754 tagtttctgaagatatcattggttctgtttttggcgaagatggcggcaatctgactcgat 1813
||||| ||||||||| ||||| ||||||| ||| ||||||||| |||||||| ||||||
Sbjct: 1865 tagttcctgaagatactattggctctgtttatggtgaagatggcagcaatctggctcgat 1924
Query: 1814 taagacagatctcaggtgcaaaagttgaagtatgcgacccttctcctggtaaaaatgata 1873
|||||||||| |||||||||||||||||||| |||| |||||| | || |||| || |
Sbjct: 1925 taagacagatttcaggtgcaaaagttgaagtgcgcgagccttcttccggcaaaagtggga 1984
Query: 1874 ggacggttgtgatttcagggacgcctgatcaaaccagggcagcacagagtttgtttcaag 1933
||| ||||| || ||||| || ||||||||||||| ||||| || || || ||||||
Sbjct: 1985 ggatagttgtcatatcaggaacacctgatcaaaccaatgcagcgcaaagcctgcttcaag 2044
Query: 1934 ccttcattttagcataccag 1953
|||||||| ||||| |||||
Sbjct: 2045 ccttcattctagcagaccag 2064
Score = 75.8 bits (38), Expect = 9e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 150 gaggaggaaaaggagcttatatcggtggctcaggacgcggtcattagggtttgtgagagg 209
|||||||||||||| || | ||||||||||| || || || |||||||||||||||||
Sbjct: 295 gaggaggaaaaggaactggtgtcggtggctcaagaggcagtaattagggtttgtgagaga 354
Query: 210 atgtgggaagttga 223
||||||||||||||
Sbjct: 355 atgtgggaagttga 368