Jatropha Genome Database

JcCA0315581.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0315581.10 + phase: 2 /partial
         (183 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29308.m000180 RNA polymerase II transcription factor B subunit, ...    50   4e-06

>29308.m000180 RNA polymerase II transcription factor B subunit,
           putative
          Length = 801

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 4   ttttgccataaaactacaattgatatggggtacatatgttc 44
           |||||||||||||| || ||||||||||| | |||||||||
Sbjct: 730 ttttgccataaaaccacgattgatatgggcttcatatgttc 770