Jatropha Genome Database

JcCA0314171.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0314171.30 - phase: 0 
         (906 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30065.m001152 Casbene synthase, chloroplast precursor, putative        78   1e-13
30169.m006314 Casbene synthase, chloroplast precursor, putative        76   4e-13
29827.m002614 Casbene synthase, chloroplast precursor, putative        58   1e-07
29673.m000927 casbene synthase, putative                               52   6e-06

>30065.m001152 Casbene synthase, chloroplast precursor, putative
          Length = 849

 Score = 77.8 bits (39), Expect = 1e-13
 Identities = 126/155 (81%)
 Strand = Plus / Plus

                                                                       
Query: 580 attggtcgtttgttgaacgatatagtatcccataaggatgagcaaaagaggggagactgt 639
           ||||||||| || |||| || |||| ||||||| |||||||||||||||||||| | |||
Sbjct: 520 attggtcgtctgatgaatgacatagcatcccatgaggatgagcaaaagaggggacattgt 579

                                                                       
Query: 640 gcttcaagtgtagagtgttacacaaaagaatatggtgttactgaagaaaaagcagttgaa 699
           |||||   | ||||||| || |  ||  ||||||||||| | ||| | |||||  |||||
Sbjct: 580 gcttcggctatagagtgctatatgaaccaatatggtgtttcagaaaagaaagccattgaa 639

                                              
Query: 700 gaaatcttgaaaatatgtggagatgcatggaaaga 734
           || ||   ||||||||||||| |||||||||||||
Sbjct: 640 gagattcagaaaatatgtggatatgcatggaaaga 674


>30169.m006314 Casbene synthase, chloroplast precursor, putative
          Length = 1668

 Score = 75.8 bits (38), Expect = 4e-13
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                        
Query: 608  cccataaggatgagcaaaagaggggagactgtgcttcaagtgtagagtgttacacaaaag 667
            ||||| |||||||||||||||||||| | |||||||||||| |||| || ||||  ||||
Sbjct: 1367 cccatgaggatgagcaaaagaggggacattgtgcttcaagtatagaatgctacatgaaag 1426

                      
Query: 668  aatatggtgt 677
            ||||||||||
Sbjct: 1427 aatatggtgt 1436


>29827.m002614 Casbene synthase, chloroplast precursor, putative
          Length = 1656

 Score = 58.0 bits (29), Expect = 1e-07
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 614  aggatgagcaaaagaggggagactgtgcttcaagtgtagagtgttacacaaaagaatatg 673
            |||| ||||||||||||||||||||  |||||||||| ||||| ||||  || |||||||
Sbjct: 1364 aggaagagcaaaagaggggagactgcccttcaagtgtggagtgctacatgaatgaatatg 1423

             
Query: 674  g 674
            |
Sbjct: 1424 g 1424


>29673.m000927 casbene synthase, putative
          Length = 816

 Score = 52.0 bits (26), Expect = 6e-06
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 580 attggtcgtttgttgaacgatatagtatcccataaggatgagcaaaagagggga 633
           ||||||||| || |||| || |||| ||||||| |||| |||||||||||||||
Sbjct: 589 attggtcgtctgatgaatgacatagcatcccatgaggacgagcaaaagagggga 642