Jatropha Genome Database

JcCA0314071.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0314071.20 - phase: 1 /pseudo/partial
         (509 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014078 similarity to nuclear protein zap, putative             153   1e-36

>30147.m014078 similarity to nuclear protein zap, putative
          Length = 2031

 Score =  153 bits (77), Expect = 1e-36
 Identities = 207/247 (83%), Gaps = 5/247 (2%)
 Strand = Plus / Plus

                                                                        
Query: 122  taaaagtaaatggtcaaatgatttagatgaagatgatattgaaggatctgaacgcatgaa 181
            |||||||||||||||| ||||||||||||||||||||   ||  |||||| | |   |||
Sbjct: 1641 taaaagtaaatggtcacatgatttagatgaagatgatgcagatagatctgcaggggcgaa 1700

                                                                        
Query: 182  gggcaatttaaatgctctttccgggttaattcaggcctatggaaagcagggaaaatctgt 241
            | || |  ||| ||||||||| ||||||||||| || ||||| ||||| ||||||||| |
Sbjct: 1701 gagcgacgtaagtgctctttctgggttaattcaagcatatgggaagcaaggaaaatctct 1760

                                                                        
Query: 242  gcgttggagtgaccaggttggcaatactggtttttctataggtgcagcaaagaaggcaca 301
            ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||  | ||
Sbjct: 1761 gcgctggagtgaccaagttggcaatactggattttctataggtgcagcaaagaaaac-ca 1819

                                                                        
Query: 302  aatgcta-tcgttggtgattggaccaggtgctggatacaacttgaagtccaacccattgc 360
               || | || || ||||||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct: 1820 ---gcaagtctttagtgattggaccaggtgccggatacaatttgaaatccaacccattac 1876

                   
Query: 361  ctgaaga 367
            || ||||
Sbjct: 1877 ctaaaga 1883



 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                        
Query: 441  gagtcctttaaagctgtttttgataagaggaaacggcggattggtaggcttgatttagag 500
            ||||| ||||||||||||||||||||||||| | |||| |||||| | ||| |||| |||
Sbjct: 1963 gagtcatttaaagctgtttttgataagaggagaaggcgaattggtggacttaatttggag 2022

                    
Query: 501  gaggaata 508
            ||||||||
Sbjct: 2023 gaggaata 2030