Jatropha Genome Database

JcCA0313951.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313951.20 + phase: 0 /pseudo
         (514 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006221 Vacuolar protein sorting-associated protein VPS9, ...   505   e-143

>29908.m006221 Vacuolar protein sorting-associated protein VPS9,
           putative
          Length = 1434

 Score =  505 bits (255), Expect = e-143
 Identities = 372/411 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagagcgccgacgtcttcctgggactgcacgactttctagagcgcatgcgtcaaccg 60
           ||||||| ||| ||||| || || ||| | |||||||| |||||||| ||||||||||||
Sbjct: 1   atggagaacgctgacgtgtttctcggattacacgacttcctagagcgtatgcgtcaaccg 60

                                                                       
Query: 61  tccgctgccgatttcgtcaaatccatcaagagcttcattgtctcattttcaaacaatgct 120
           |||||  | |||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 61  tccgcctctgatttcgttaaatccatcaagagcttcattgtttctttttcgaacaatgct 120

                                                                       
Query: 121 cctgatccagaaagggatagtgccctggtacaggacttccttgccaaaatggaagcggct 180
           ||||||||||||||||| |||||  |||||||||| || |||||||| |||||||| |||
Sbjct: 121 cctgatccagaaagggacagtgctttggtacaggagtttcttgccaacatggaagcagct 180

                                                                       
Query: 181 ttcagggctcatccactttgggctggttgttcagacgaggagctggagagtgctggtgaa 240
           || |||||||||||||||||||||||||| || || || ||  |||||||||||||||||
Sbjct: 181 tttagggctcatccactttgggctggttgctctgatgacgaattggagagtgctggtgaa 240

                                                                       
Query: 241 ggactcgagaagtatgtaatgacgaagttatttacccgtgtatttgcttcaattccagat 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 241 ggactcgagaagtatgtaatgacaaagttatttacccgtgtatttgcttcacttccagat 300

                                                                       
Query: 301 gatgttaaagttgatgagcaactttctgagaagatgtctttgattcaacagttcattcga 360
           |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 301 gatgttaaagctgacgagcagctttctgagaagatgtctttgattcaacagttcattcgg 360

                                                              
Query: 361 ccagaaaatttggacattaagccaacctttcaaaatgaaacatcatggctg 411
           ||||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct: 361 ccagaaaatttagacattaagccaccttttcaaaatgaaacatcatggctg 411