Jatropha Genome Database

JcCA0313811.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313811.10 - phase: 0 /partial
         (507 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30009.m000840 U3 small nucleolar RNA-interacting protein, putative    198   2e-50

>30009.m000840 U3 small nucleolar RNA-interacting protein, putative
          Length = 1719

 Score =  198 bits (100), Expect = 2e-50
 Identities = 348/433 (80%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtccctgaggagtcgaggttgatatttcgtgcttcagcatcgtctctggaatgttgttgt 60
            |||||||||||||| || ||||| || ||| ||||||||||||| || ||||||||||||
Sbjct: 997  gtccctgaggagtcaagattgatcttccgttcttcagcatcgtcactagaatgttgttgt 1056

                                                                        
Query: 61   tttattgataatgatgaatttttatctggttcggatgatggaaatattgaggtctggggc 120
            |||||||||||||| ||||||||||| || || |||||||||||||||||| |||||  |
Sbjct: 1057 tttattgataatgacgaatttttatcgggatcagatgatggaaatattgagctctggacc 1116

                                                                        
Query: 121  atgcnnnnnnngaagcccgtgtacattgtgaggaatgctcatgctctctttactgacaac 180
              ||       |||||| || |||||||| | ||||||||||||| | || | ||||  |
Sbjct: 1117 gcgcaaaaaaagaagcctgtatacattgttaagaatgctcatgctttgttgattgacccc 1176

                                                                        
Query: 181  acaaatttggagcaaaaagaaaatggaagcatctttaatggtgataaagcatgttcctgg 240
            |  |||   || |||||||| ||||  ||  | |  | ||||   | |||||||||||||
Sbjct: 1177 aagaatcctgaacaaaaagataatgccagtctttccagtggtccaatagcatgttcctgg 1236

                                                                        
Query: 241  gtaagttcagtcactgtatgtagaggcagtgatcttgctgcgtcaggggctggtaatggt 300
            || ||||||||| |||| |||| |||||||||||| ||||| || || ||||||||||| 
Sbjct: 1237 gtgagttcagtcgctgtctgtacaggcagtgatctagctgcatcgggagctggtaatgga 1296

                                                                        
Query: 301  tctgttcacttatgggctattgaaagtgctccggcttgcattcgacctctgtatgatgtt 360
            ||||||| | |||||||||||||  |||||||     ||||||||||  |||||||| ||
Sbjct: 1297 tctgttcgcctatgggctattgatggtgctcccaaaggcattcgacccttgtatgatctt 1356

                                                                        
Query: 361  ccattggttggatttgtcaattcactagctttttccaaatctggagagttccttgttgct 420
            ||||||||||||||| |||| ||  | || ||||| |||||||||  |||||||| ||| 
Sbjct: 1357 ccattggttggatttatcaactctttggcattttcaaaatctggaaggttccttgctgcg 1416

                         
Query: 421  ggagttggtcagg 433
            |||||||| ||||
Sbjct: 1417 ggagttgggcagg 1429



 Score = 63.9 bits (32), Expect = 9e-10
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                        
Query: 430  caggagcctcgcctaggaaggtgggggcaaatttcagctgctcgaaatggagtagcgatt 489
            ||||| ||||| |||||| | ||||| | |||||||||||||| ||||||||| ||||||
Sbjct: 1595 caggaacctcgactaggacgatggggacgaatttcagctgctcaaaatggagtcgcgatt 1654

                        
Query: 490  catcggttgaaa 501
            || | |||||||
Sbjct: 1655 caacagttgaaa 1666