Jatropha Genome Database

JcCA0313461.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0313461.20 + phase: 0 /partial
         (240 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001183 pentatricopeptide repeat-containing protein, putative   133   5e-31

>29709.m001183 pentatricopeptide repeat-containing protein, putative
          Length = 1074

 Score =  133 bits (67), Expect = 5e-31
 Identities = 166/199 (83%)
 Strand = Plus / Plus

                                                                       
Query: 42  agcttcaatgccaaacaaaaccgtcatcatcgctgttctcaacaaggcctacgtagagcc 101
           |||||||||||| ||||||||||||||||||| | |||| || ||||| || | ||| ||
Sbjct: 213 agcttcaatgcccaacaaaaccgtcatcatcgttattctgaataaggcgtatgcagaacc 272

                                                                       
Query: 102 gagcgttaaatcggaaacgacgatgctggatctttttctagagagcttttggtatgggga 161
            |  |||||||| ||||| || ||||| |||||||| || ||||||||||||   |||||
Sbjct: 273 aacggttaaatctgaaaccacaatgcttgatcttttcctggagagcttttgggtagggga 332

                                                                       
Query: 162 ggacaccaggtcacttctcgaccatctacttgtcgttgccgtggatcaaacggcgtacga 221
           |||||||||| |||| ||||||||||||||  | || || | |||||| |||||||||||
Sbjct: 333 ggacaccaggccactcctcgaccatctactgctggtagcggcggatcagacggcgtacga 392

                              
Query: 222 tcggtgcaagttcaagcgg 240
             |||||| ||||||||||
Sbjct: 393 gaggtgcatgttcaagcgg 411