Jatropha Genome Database

JcCA0312871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0312871.10 - phase: 0 
         (1032 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002113 DNA binding protein, putative                           244   9e-64

>29647.m002113 DNA binding protein, putative
          Length = 1023

 Score =  244 bits (123), Expect = 9e-64
 Identities = 291/347 (83%)
 Strand = Plus / Plus

                                                                        
Query: 663  tgatcgtcaacgcagggaacgaattgctgaaagactcaaggcactgcacaacttggttcc 722
            |||||||| |||||| ||||||||||||||||||||||| ||||||||  |  || ||||
Sbjct: 657  tgatcgtcgacgcagagaacgaattgctgaaagactcaaagcactgcaagaactgcttcc 716

                                                                        
Query: 723  acaatctgtagagggcagccaaacagctatggtggatgatattattgactatgtcaagtt 782
            ||| ||||| ||||| ||||||| ||   || ||||||| ||||| ||||||||||||| 
Sbjct: 717  acattctgtcgagggaagccaaatagtcgtgatggatgaaattatcgactatgtcaagta 776

                                                                        
Query: 783  cctgcagcttcaggtgaaggaattaagccggagcagattgggaggtgaactgcgttctga 842
            ||||||||||||| ||||||||||||| ||||||||||||| |||| |  || |||||| 
Sbjct: 777  cctgcagcttcagatgaaggaattaagtcggagcagattggaaggtcacttgtgttctgg 836

                                                                        
Query: 843  tccttccattttcctagagggataccatcactatattgttcatgagcagttcaggactga 902
             ||  ||  |||||| |||||||| ||||  |||||| ||||| |||||   | || |||
Sbjct: 837  ccccgcccatttccttgagggatatcatccttatattcttcatcagcagacaatgaatga 896

                                                                        
Query: 903  acctcttgaggagacatttacaaggttgctggaagtgaatccatctgccgcaaccaagtt 962
            ||||||||| |||||| |  | | ||||||| |||||||| ||||||| ||||| || ||
Sbjct: 897  acctcttgaagagacaatggcgaagttgctgaaagtgaattcatctgctgcaacaaaatt 956

                                                           
Query: 963  cttggagagcaagggcctttttgtgatgccgatggctttggctgaca 1009
             ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 957  tttggagagcaagggcctttttgtgatgcccatggctttggctgaca 1003



 Score = 56.0 bits (28), Expect = 4e-07
 Identities = 93/114 (81%), Gaps = 3/114 (2%)
 Strand = Plus / Plus

                                                                       
Query: 252 tcatgtgttagagagcattcctcaaactgttagcgactcacatttcattcaaggaatgac 311
           |||||| |||||||||||||||  | | ||| | ||||| |||||||||||||| | |||
Sbjct: 243 tcatgtattagagagcattccttcaccagttggtgactcgcatttcattcaaggcacgac 302

                                                                 
Query: 312 tggaatccaaactgaattactgtacaacagttcaggaatggcttgtggttctaa 365
           || ||||||||  |||||| | |||||   |||||||||| ||| | |||||||
Sbjct: 303 tgaaatccaaaaagaattattttacaa---ttcaggaatgccttctagttctaa 353