Jatropha Genome Database
- JcCA0312381.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0312381.10 - phase: 0 /partial
(1015 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29848.m004527 pentatricopeptide repeat-containing protein, putative 418 e-116
29482.m000172 pentatricopeptide repeat-containing protein, putative 64 2e-09
30063.m001440 pentatricopeptide repeat-containing protein, putative 58 1e-07
30169.m006320 pentatricopeptide repeat-containing protein, putative 54 2e-06
>29848.m004527 pentatricopeptide repeat-containing protein, putative
Length = 1524
Score = 418 bits (211), Expect = e-116
Identities = 760/943 (80%)
Strand = Plus / Plus
Query: 51 atggaatgagattatcaagaagcacatgcttgtgggaaatgcagaacaagctgttctaac 110
||||||||||||||||| |||||| |||| | |||| |||| | ||||||| || | ||
Sbjct: 51 atggaatgagattatcaggaagcaaatgcatatgggtaatggcgcacaagctattttgac 110
Query: 111 ttatgtgaatatgcaagtacatggttttcgtgctgataactatacctttcctattttact 170
|||| |||| | |||| || ||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 111 ttatttgaaagttcaagaacttggctttcatgctgataactatacatttcctattttact 170
Query: 171 caaagcagctgggaagaattgtgcctctcgcatcgggtttgcgtttcatggccagacaat 230
|||||||||||||| || |||||||||| || |||||||| ||||||||||||| ||
Sbjct: 171 caaagcagctgggaggatttgtgcctctaaaattgggtttgctcttcatggccagaccat 230
Query: 231 caaaactggtttctacagacatatatttgtccaaactgctttgataaacatgtatgggac 290
|| |||||||| | ||| ||||||||||||||| || | |||||||| || |
Sbjct: 231 aaagactggtttttgtgcccatgcttttgtccaaactgctctggttaacatgtacggaaa 290
Query: 291 tcttcactgcactgctgatgcttgtaaaatgtttgagaatatgcctgtgaaagatttggt 350
|||||| |||| || |||||||| |||| ||||||||| ||||||||||||||| ||| |
Sbjct: 291 tcttcattgcattggtgatgcttttaaagtgtttgagattatgcctgtgaaagacttgat 350
Query: 351 tgcttggaactccatgttagatgcatatgcttctaatggtgagatggaagatgctatatc 410
||||||||| || |||||||| |||||||||||||||| ||||||| |||||
Sbjct: 351 tgcttggaattctatgttagacgcatatgcttctaatgcccagatggattatgcttctaa 410
Query: 411 tttgttccacatgatgcctttaaaggacctctcatctttcaatatcttgatttctggata 470
||||||| | |||||||||||||||| |||||||||| ||||| |||||||||| ||
Sbjct: 411 tttgttcaattcgatgcctttaaaggacatctcatcttttaatattatgatttctgggta 470
Query: 471 ctcaagctgtggggaagtattggctgctaggagcatatttgataaaatggcaataaaaga 530
|||| | | || |||| | || |||||||| || |||||| ||||| | | | |||
Sbjct: 471 ttcaaccagaggagaagcaatgctggctaggagtatctttgattcaatggaagtgagaga 530
Query: 531 tattgtctcttggaactcaatattatcagcatgcactcgagctggagatatggagaaagc 590
| |||| |||||||||||||| ||||||| | | ||||||||||||||||||| |
Sbjct: 531 ttttgtttcttggaactcaatgatatcagcgtatatcagagctggagatatggagaaggg 590
Query: 591 ttttgcgttgttccaggaaatgccaatgaaaaataccatctcatggaacacaatgcttgc 650
| |||| ||||| ||||||||| | |||||||| | | ||||| || ||| | |
Sbjct: 591 tcttgcattgtttagagaaatgccagtaaaaaatactgttacttggaataccatgataac 650
Query: 651 aggatgtttacaaagaggacagttcagtgaggctgttgacttgtttgatgaaatgaagac 710
||||||||||||||| | ||| || || || | |||| ||||| || |||||||||||
Sbjct: 651 aggatgtttacaaagtgaacattttggtatggttcttgatttgttcgaagaaatgaagac 710
Query: 711 cacaaattgcttaccagattatcttacagccactagtgtcttatccgcatgtgcgcattt 770
| |||||| | |||| ||||||||||||| |||||||| ||||| | |||| |||||
Sbjct: 711 cgcaaattacatacctgattatcttacagtgactagtgttttatctacctgtggccattt 770
Query: 771 gggatcactggaaaccggaattaaaatccatgtatatgccatttatagtgggcttgcttc 830
||||||| ||| ||| ||||||||||||||| ||||||| ||| ||| |||||||| ||
Sbjct: 771 gggatcattgggaacaggaattaaaatccatatatatgctattgataatgggcttgtatc 830
Query: 831 aagtccccatgtgacaactgctttgatggatatgtatgcaaagtgtggaagcatagaaca 890
|||||||||||| ||||| ||||| || ||||||||| | || |||||||||||||||||
Sbjct: 831 aagtccccatgtcacaacagctttaattgatatgtattctaaatgtggaagcatagaaca 890
Query: 891 agctttacagatattctttaaggcccaagttaaggatatttactgttggaatgctataat 950
|| |||||| | || | ||| |||||||||| ||||| || || ||||| || | ||
Sbjct: 891 aggtttacatgtgttttgtaaatcccaagttaaagatatctattgctggaacgccttgat 950
Query: 951 ttctgggcttgcacttcatggccatggctatgctgctctcaaa 993
|||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 951 ctctgcgcttgcacttcatggtcatggctatgctgctctcaaa 993
>29482.m000172 pentatricopeptide repeat-containing protein, putative
Length = 1728
Score = 63.9 bits (32), Expect = 2e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 845 caactgctttgatggatatgtatgcaaagtgtggaagcat 884
|||||||||| || ||||||||||||||||||||||||||
Sbjct: 1370 caactgctttaattgatatgtatgcaaagtgtggaagcat 1409
>30063.m001440 pentatricopeptide repeat-containing protein, putative
Length = 1848
Score = 58.0 bits (29), Expect = 1e-07
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 857 tggatatgtatgcaaagtgtggaagcatagaacaagc 893
||||||||||||| ||||||||||||||||| |||||
Sbjct: 1142 tggatatgtatgccaagtgtggaagcatagatcaagc 1178
>30169.m006320 pentatricopeptide repeat-containing protein, putative
Length = 2769
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 844 acaactgctttgatggatatgtatgcaaagtgtgg 878
|||| |||||||||||||||||||||||| |||||
Sbjct: 2572 acaaatgctttgatggatatgtatgcaaaatgtgg 2606