Jatropha Genome Database

JcCA0311501.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311501.30 - phase: 1 /partial
         (386 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m001967 cyclophilin, putative                                   145   2e-34

>29883.m001967 cyclophilin, putative
          Length = 2067

 Score =  145 bits (73), Expect = 2e-34
 Identities = 166/197 (84%)
 Strand = Plus / Plus

                                                                        
Query: 42   agcatttctcgtagtccaggcagttatcgtggccgttacagggatcaaagccggagtcag 101
            |||| |||||| |||||||| ||| ||| | ||||  | ||||||||| ||||||| |||
Sbjct: 1738 agcacttctcgcagtccaggaagtcatcatcgccgccatagggatcaacgccggagccag 1797

                                                                        
Query: 102  agtccaattcgcagtcctagtcctagagataagcgaccttcaataagtgagggtctgaaa 161
            |||||| |||||||||||||||||||||| | | ||||| | ||||||||||||||||||
Sbjct: 1798 agtccagttcgcagtcctagtcctagagacaggagacctgccataagtgagggtctgaaa 1857

                                                                        
Query: 162  tcgcgtctgggcccccgaattgatgatcaacgctcattgaacaaaggaagattgaggtcc 221
            || || ||||| |||||||| |||||||  ||| |  || ||| ||||||||| ||||||
Sbjct: 1858 tctcgactgggtccccgaatggatgatcggcgccctatggacagaggaagattaaggtcc 1917

                             
Query: 222  agttctaggtccaggag 238
            ||||| ||||| |||||
Sbjct: 1918 agttccaggtctaggag 1934