Jatropha Genome Database

JcCA0311471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311471.10 - phase: 0 /pseudo/partial
         (933 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29955.m001175 conserved hypothetical protein                          494   e-139

>29955.m001175 conserved hypothetical protein
          Length = 1194

 Score =  494 bits (249), Expect = e-139
 Identities = 342/373 (91%)
 Strand = Plus / Plus

                                                                       
Query: 373 ggaaccagggctgggctttttagaactccaatttcaggtggagtgcaaagtgcaacctca 432
           |||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 376 ggaaccagagccgggcttttcagaactccaatttcaggtggagtgcagagtgcaacctca 435

                                                                       
Query: 433 gctcatggattacctcgaccagccttagcagtccgcaatttgatggagcaggccagattt 492
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 436 gctcatggcttacctcgaccagccttggcagtccgcaatttgatggagcaggccagattt 495

                                                                       
Query: 493 gctcatctatgtactgtcatgtctcgaatgcatcatagaagagaaggatatccatttggt 552
           ||||||||||| ||| | |||||||||||||||||| ||||||||||||| || ||||||
Sbjct: 496 gctcatctatgcactataatgtctcgaatgcatcatcgaagagaaggatacccttttggt 555

                                                                       
Query: 553 tccttggttgactttgcaccagatccaatgggccatccaatattttcattttctccattg 612
           ||  |||||||||||||||||||| |  | || |||||||||||||||||||| ||||||
Sbjct: 556 tcgctggttgactttgcaccagattcggttggacatccaatattttcattttcaccattg 615

                                                                       
Query: 613 gctatccacacacgaaatttattagcagaccctagatgcacgctcgttgtgcagatacct 672
           || |||||||||||||| || |||||||| ||||||||||| || |||||||||||||||
Sbjct: 616 gccatccacacacgaaacttgttagcagatcctagatgcacacttgttgtgcagatacct 675

                                                                       
Query: 673 ggatggagtggcttgtcaaatgctagggtaacaatctttggtgatgtctttccacttcca 732
           ||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct: 676 ggatggagtggcttgtcaaatgccagggtaacaatttttggtgacgtcttcccacttcca 735

                        
Query: 733 gaaaatcaacagg 745
           ||| |||||||||
Sbjct: 736 gaagatcaacagg 748



 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 149 ataagcgaattgggtctctcaaatttcctgaaactgct 186
           |||||||||||||||||||||||||| |||||||||||
Sbjct: 116 ataagcgaattgggtctctcaaatttgctgaaactgct 153