Jatropha Genome Database

JcCA0311331.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0311331.20 - phase: 0 
         (546 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013998 ubiquitin-conjugating enzyme m, putative                250   7e-66
29646.m001060 ubiquitin-conjugating enzyme m, putative                117   7e-26

>30170.m013998 ubiquitin-conjugating enzyme m, putative
          Length = 381

 Score =  250 bits (126), Expect = 7e-66
 Identities = 267/314 (85%)
 Strand = Plus / Plus

                                                                       
Query: 49  aatgggaaggctccagtcaagaagcaaagtgctggggaattacgtcttcataaagacata 108
           ||||||||| ||| || ||| ||||||||||||||||| ||||||||| ||||||| |||
Sbjct: 55  aatgggaagcctctaggcaaaaagcaaagtgctggggagttacgtcttaataaagatata 114

                                                                       
Query: 109 agtgagttgaacctgccaaaatcatgtaccatatccttcaccaatggaaaggatgacctg 168
           | ||||||||| ||||||||| |||| | |||||  ||||  || |||||||||||||||
Sbjct: 115 attgagttgaatctgccaaaagcatgcagcatatgtttcaataacggaaaggatgacctg 174

                                                                       
Query: 169 atgaactttgtggtcactgttaagcctgatgaaggatactataagaatggcaattttcaa 228
           ||||| || | ||||||  ||| ||||| ||||||||| ||||||  ||| || |||   
Sbjct: 175 atgaatttcgaggtcaccattatgcctggtgaaggatattataagggtgggaaatttgtg 234

                                                                       
Query: 229 ttctcttttcaagtgccagatgtctatcctcatgaggcaccaaaagtcaagtgccaaaca 288
           ||||||||||||||| || |||| ||||| || || || |||||||| |||||||| |||
Sbjct: 235 ttctcttttcaagtgtcacatgtttatccacacgatgccccaaaagtgaagtgccagaca 294

                                                                       
Query: 289 aaggtttatcatcctaatattgacttggaaggcaatgtgtgcctgaacattcttcgagaa 348
           |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| |||
Sbjct: 295 aaggtttaccatcctaacatcgacctggaaggcaatgtatgcctgaacattcttcgggaa 354

                         
Query: 349 gactggaaacctgt 362
           ||||||||||||||
Sbjct: 355 gactggaaacctgt 368


>29646.m001060 ubiquitin-conjugating enzyme m, putative
          Length = 552

 Score =  117 bits (59), Expect = 7e-26
 Identities = 128/151 (84%)
 Strand = Plus / Plus

                                                                       
Query: 251 tctatcctcatgaggcaccaaaagtcaagtgccaaacaaaggtttatcatcctaatattg 310
           ||||||| ||||| || ||||| || |||||| | || |||||||| ||||| || ||||
Sbjct: 257 tctatccgcatgaagcgccaaaggttaagtgcaagaccaaggtttaccatccaaacattg 316

                                                                       
Query: 311 acttggaaggcaatgtgtgcctgaacattcttcgagaagactggaaacctgttctaaata 370
           |||||||||| ||||| ||||| || ||  | |||||||||||||||||||| || ||||
Sbjct: 317 acttggaaggaaatgtctgcctcaatatcttgcgagaagactggaaacctgtcctcaata 376

                                          
Query: 371 taaacaccatcatttacggattatttcatct 401
           ||||||| |||||||| ||||||| ||||||
Sbjct: 377 taaacactatcatttatggattatatcatct 407