Jatropha Genome Database
- JcCA0311281.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0311281.10 - phase: 0 /partial
(2106 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014390 brca1 interacting protein helicase 1 brip1, putative 1524 0.0
>30170.m014390 brca1 interacting protein helicase 1 brip1, putative
Length = 3747
Score = 1524 bits (769), Expect = 0.0
Identities = 1514/1764 (85%), Gaps = 12/1764 (0%)
Strand = Plus / Plus
Query: 123 aaatgcagttaaagtcagaggtcatccatcgcttcaaaggggaggttgccatgaggtcca 182
||||||| |||||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 639 aaatgcacataaagttaaaggtcatccatcgcttcaaaggggaggttgtcatgaggtcca 698
Query: 183 tgatattgaagatctggttaaaattggaaaagttgttaaaggttgttcatattatgcagc 242
||||||||||||||| || ||| ||||||||||||||| ||| |||||||||||||||||
Sbjct: 699 tgatattgaagatcttgtcaaagttggaaaagttgttagaggctgttcatattatgcagc 758
Query: 243 tcgttcaatggcagatgatgcacagttagttttctgcccatacagctacttaattaatcc 302
||| |||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 759 tcgctcaatggcagatgatgcacagttagttttctgcccatacaactatgtaataaatcc 818
Query: 303 agtcatccgtggagcaatggatataaacattacaggagccattcttattcttgatgaagc 362
||||||||| ||||||||||| ||| |||||| ||| |||||||||||||| ||||||||
Sbjct: 819 agtcatccgaggagcaatggaaatagacattagaggggccattcttattctcgatgaagc 878
Query: 363 ccacaacatagaagacattgctcgtgatgctggtagtgttgatgttgatgaagatgtttt 422
|||||| |||||||||||||| ||||||||||||||||| |||||||| |||||| || |
Sbjct: 879 ccacaatatagaagacattgcccgtgatgctggtagtgtggatgttgaagaagatattct 938
Query: 423 aattaaattgcagatggaattgcagcaactttgtcttcttgatgcgtccatttatgaacc 482
| ||||||||||| |||||| ||||||||||| | | || | || ||||| ||||
Sbjct: 939 atataaattgcagacggaattagagcaactttgtgtacacaatacctcgatttaccaacc 998
Query: 483 attacatgatatggcacaggatttggttagttggattaagcggaggaaaagtacattaca 542
|||| |||| ||| |||||||| || | ||||||||| | | |||||||| ||||| ||
Sbjct: 999 attatatgaaatgacacaggatctgctaagttggattgaccaaaggaaaagcacattgca 1058
Query: 543 gaagcgtgaatttcagaactatttctcttgttggactggtgataaggctctaaaggagct 602
||||| || |||||| |||| |||||| |||||| |||||||||||| | | ||||||
Sbjct: 1059 gaagcatggttttcagcactacttctctagttggagcggtgataaggctttgagggagct 1118
Query: 603 ccaagaggctaacatttcacagcagtgcttcccaatcttgctagattgtgctacaaaggc 662
|||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1119 ccaagaggctaatatttcacaacagtgcttcccaatcttgctggattgtgccctaaaggc 1178
Query: 663 aattaaagctgcaacagatacagaattggacacagatcatttgagtggcatgtcagtaat 722
|||||||||||| |||||||||||| |||| || |||||| ||||||||| |||| ||
Sbjct: 1179 aattaaagctgcgacagatacagaaccagacatagctcatttaagtggcatggcagtgat 1238
Query: 723 agtgttggaaggtttattctcttcactcacttatttcttctcgagaaatggctgtcacat 782
|||||||||||| ||||| || ||||| ||||||||||||||||||||||| || || |
Sbjct: 1239 agtgttggaagggttattttcctcacttacttatttcttctcgagaaatggttgccatgt 1298
Query: 783 atctgattatcagcttgccttgcgacgatatgtgaagagagacnnnnnnnntcctgttgg 842
||| || ||||| ||||| |||| ||| || | |||||||| ||| |||||
Sbjct: 1299 atccgactatcaacttgcattgcaacggcatattaagagagatagaaaaagtcccgttgg 1358
Query: 843 tgactggacgtgtactttaagtttatggtgcttgaatccagctgttgttttcagtgacat 902
||| |||||| ||| |||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 1359 tgaatggacgctaactctaagcttatggtgcttgaatcctgctgttgttttcagagatat 1418
Query: 903 cgctaagatttctttgtcagtcattttaacatctgggactctatcaccaatgaattcctt 962
||| | ||||||||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct: 1419 tgctgatctttctttgtcagtaattttaacttcagggactctatcaccgatgaattcctt 1478
Query: 963 ctgttctgagcttggagttcattttggaacttgtctggaagcaccacatgtaattgatac 1022
| ||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |
Sbjct: 1479 ttcatctgagcttggagttcagtttggaacttgtttggaagcgccacatgtaattgacaa 1538
Query: 1023 tgaatcacaggtatgggctgctgtaatatccactggtcctgataattatccactgaatgc 1082
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1539 tgaatcacaagtgtgggctgctgtaatatccactggtccagataattatccactgaatgc 1598
Query: 1083 aagttacaaaacagcagatgaatatgctttccaggatgcacttggcaaaactttggagga 1142
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct: 1599 aagttacaaaacagcagatgagtttgctttccaggatgcacttggtaaaactttggagga 1658
Query: 1143 aatttgcatgattgttccagcgggctctcttgtgttctttccgagttataagctgatgga 1202
||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||
Sbjct: 1659 aatttgcatgattgttccagctggctctcttgtgttcttcccaagttataaactgatgga 1718
Query: 1203 gaaactgtgcagtcgttggcgtgaaactggccaatgggctcgactaaatgcgagaaagac 1262
|||||||| | |||||||||||||||||| |||||| ||||||| ||||| | |||| |
Sbjct: 1719 aaaactgtgtaatcgttggcgtgaaactggtcaatggtctcgactgaatgcaaaaaagtc 1778
Query: 1263 cctgtttgttgagcctagaggaggaagtcaggaggaagattttgactctgttttgaaggg 1322
|| |||||||| || | ||||||| || ||||| || |||||||||||||| |||||
Sbjct: 1779 actctttgttgaacc---aagaggaagccaagaggaggaatttgactctgttttaaaggg 1835
Query: 1323 atattatgattcaattcatcaacgcagcccacaagctgttggtagaaagaggaggaccaa 1382
|||||||| || ||| | || ||| | |||| |||||||| ||||||| || |||
Sbjct: 1836 ttattatgactcgatttgtaaatgcaacacacatgctgttggaagaaagaaaagagtcaa 1895
Query: 1383 aaaagcagaccttagtcacttaaaggctatgaaatccacagaaacttctgaaaaagatgg 1442
|| ||||||| ||||||| | |||||||||||| || | |||| ||
Sbjct: 1896 aaggttggacctta------aaaaggctgtagaatccacagaaaatttaggaaaa---gg 1946
Query: 1443 agctgcttttctggctgtttgccggggaaaggtttcagaaggaatggacttttctgatga 1502
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 1947 agctgcttttcttgctgtttgccggggcaaggtctcagaaggaatggacttttctgatga 2006
Query: 1503 caatgctagagtggttatagtagttggtattccatttccaaacatacatgatattcaagt 1562
|||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 2007 taatgctcgagttgttatagtagttggtatcccatttccaaacatacttgatattcaagt 2066
Query: 1563 tggtctaaagaagaattataatgatgcatacaaagcatccaaaaatcttctaagtggcaa 1622
| | |||||||||| ||||||||| ||||||| | |||||||| ||||| ||||| ||
Sbjct: 2067 tcgcctaaagaagagctataatgatacatacaagacgtccaaaaaccttcttagtgggaa 2126
Query: 1623 tgaatggtattgtcagcaagccttccgagctctgaatcaagctataggacgctgtatacg 1682
|||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 2127 tgaatggtattgctaccaagcattccgagctttgaatcaagctataggacgctgtatacg 2186
Query: 1683 acataggtttgactatggagccatcgtcctattagatgagcgttacaagaaagagcagaa 1742
|||||||||||||||||| |||||| ||||| ||||||| ||||| ||||| ||||||||
Sbjct: 2187 acataggtttgactatggggccatcatcctactagatgaacgttataagaaggagcagaa 2246
Query: 1743 taaaatatacatttcaaagtggctaaggaaatctattcgccagtatgatagctatggcat 1802
| ||| |||||||||||||||||||| ||||| ||| ||||||| ||||| ||| ||||
Sbjct: 2247 cagaatgtacatttcaaagtggctaagaaaatcaatttgccagtacgatagttatagcat 2306
Query: 1803 gtcaatagagggattaaaatcctttttccgagatgccaaggagaacattggcaagaagat 1862
|||||||||||| ||||||||||||||| | |||| |||||| ||||| |||||||||||
Sbjct: 2307 gtcaatagaggggttaaaatcctttttcagggatgtcaaggaaaacataggcaagaagat 2366
Query: 1863 ggtggatctcttgccaaattctga 1886
||| |||| || |||||||||||
Sbjct: 2367 ggttgatcaattaccaaattctga 2390
Score = 89.7 bits (45), Expect = 6e-17
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1 atggcagttttggcttcaaggaaacattactgcacaaattcacatgtcaatgggaaggag 60
|||||||| ||||||||||||| |||||||||||||||| |||| || |||||||||||
Sbjct: 517 atggcagtgttggcttcaaggagacattactgcacaaatgcacacgtaaatgggaaggaa 576
Query: 61 aatctcgatgaagaatg 77
||| | |||||||||||
Sbjct: 577 aatattgatgaagaatg 593