Jatropha Genome Database

JcCA0310901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0310901.10 + phase: 0 
         (735 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008700 conserved hypothetical protein                           62   5e-09

>30174.m008700 conserved hypothetical protein
          Length = 732

 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 211/271 (77%)
 Strand = Plus / Plus

                                                                       
Query: 301 actaaaaccgacggcacctatcttaatgcggcgacggtggcaagagtggaggtgaggaat 360
           |||||| ||||||| || ||||| ||||| || || ||||||||||| ||||| ||||||
Sbjct: 301 actaaacccgacggaacttatctcaatgctgccactgtggcaagagtagaggtcaggaat 360

                                                                       
Query: 361 cctaaccctcgattaacgtatcgatacggtgtgtctgaggtggagattacagtcgggaag 420
           || ||  ||   ||||||||||||||| ||| |||| ||||  | || ||| ||||  ||
Sbjct: 361 cccaattctaagttaacgtatcgatacagtgagtctcaggtccaaatgacactcggtcag 420

                                                                       
Query: 421 gaacagcagactgagttgggatcgacgagtttggcaggattcattcaggctaaaaagaac 480
           || |||  |||| | ||||| || | ||||||  | |||||| |||||| ||||||||||
Sbjct: 421 gatcaggggactcaattgggttccatgagtttacctggattccttcaggataaaaagaac 480

                                                                       
Query: 481 acgacgagcctcaagattgcgactcgagtgaagaacgcggtaattgaggatggggtgggt 540
           || || ||  ||||||||  ||   | |||||||| | | | ||||||||||| || || 
Sbjct: 481 accaccagtttcaagattcagatgagtgtgaagaatgagctgattgaggatggtgttggg 540

                                          
Query: 541 tccagactcaagtctcattttaaaagcagaa 571
           ||||| || |||||||| || ||||| ||||
Sbjct: 541 tccaggcttaagtctcagttcaaaagtagaa 571