Jatropha Genome Database
- JcCA0310831.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310831.20 - phase: 0
(1710 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30146.m003439 RNA m5u methyltransferase, putative 1463 0.0
>30146.m003439 RNA m5u methyltransferase, putative
Length = 1734
Score = 1463 bits (738), Expect = 0.0
Identities = 1280/1460 (87%), Gaps = 3/1460 (0%)
Strand = Plus / Plus
Query: 254 gaggccagactttggagttggtttgtgagtctttggctttcaaggggaagggtgtatgca 313
||||||||| |||||||||||||||||||||||||||||| || || |||||||| || |
Sbjct: 275 gaggccagagtttggagttggtttgtgagtctttggcttttaaaggaaagggtgtctgta 334
Query: 314 aagtgcccgatactgggttcgttctcatgtgtgaccgtgcacttcctggtgaaagattca 373
||||| | ||||||||||| ||| | ||||||||||||||| | ||||||||||| ||||
Sbjct: 335 aagtggcagatactgggtttgttgttatgtgtgaccgtgcattacctggtgaaaggttca 394
Query: 374 ttggccgggtaacacgcagaaaaggaagttatgctgaggtaactaaggtgaaaacgttat 433
| ||||| || ||| | |||||||| || ||||| |||||||| || ||||| || |||
Sbjct: 395 tcggccgagttacaagaagaaaagggagctatgcagaggtaaccaaagtgaagacaatat 454
Query: 434 cccctcatttggatattgtagatgccccttgtgagtatgctgcatattgtgggggttgta 493
| ||||||| ||||||| |||| || |||||||| ||||| |||||||||| |||||||
Sbjct: 455 ctcctcattgggatattatagaggctccttgtgaatatgcctcatattgtggtggttgta 514
Query: 494 aaactcaaaatctggtgtacgaggctcagctcaaagctaaggaacagcaagtccatgggt 553
|||| |||||| | || ||||||||| | | ||||||||||| |||||| | || ||
Sbjct: 515 aaacccaaaatttatcttatgaggctcaggttagagctaaggaactgcaagttcgtgagt 574
Query: 554 tggtggtaaatgttgggaaattttcagataaagatccagaattttatagcattatgaagc 613
||||| | ||| |||| |||||||| |||| ||||||||||||| ||| ||||||||||
Sbjct: 575 tggtgattaatattggaaaattttccgatatagatccagaatttgttagtattatgaagc 634
Query: 614 ccattgttccctgtgattttcaattccattatagaaataagatggagttctcatttggtc 673
||||||||||||||||| || ||||||| || |||||||||||||| ||||||||||||
Sbjct: 635 ccattgttccctgtgatgttaaattccactacagaaataagatggaattctcatttggtt 694
Query: 674 ctcaaaaatggctacctaaggagttaataggagagaaacaagaaggcagtgaaagctatg 733
|| |||||||| |||||| || || | || ||||||||||| ||||||| | |||||
Sbjct: 695 ctaaaaaatggttacctagagaattgctgggtgagaaacaagatggcagtgtgaactatg 754
Query: 734 cattgggactgcatgctccaggcttttttgacaaggttctaaatgttgacgggtgcttgt 793
| ||||||||||| |||||||||| ||| || |||||||||||||||||| |||||||
Sbjct: 755 ctttgggactgcacgctccaggctgtttcgataaggttctaaatgttgacaaatgcttgt 814
Query: 794 tacaaagtgagcctgctaacacggttctagcaactgtccaagattgttggagggattcag 853
||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 815 tacaaagtgagcctgctaatacggttctggcaactgtccaagattgttggagagattcac 874
Query: 854 ---tgggccttactccttataatgtttattctcatgctgggtttctcaagcacctaatgc 910
| || |||||||||||| ||||| ||||||||| || |||||||||||||||||||
Sbjct: 875 aatttggtcttactccttatgatgttcattctcatgacggatttctcaagcacctaatgc 934
Query: 911 taagaactggaaggaatgctgagtctggttcgcttgagctcatggttaactttgtcacct 970
||||||| |||||||| | ||| |||||| ||||||||| |||||||||||||||||||
Sbjct: 935 taagaacgggaaggaacaccgagactggtttgcttgagcttatggttaactttgtcacct 994
Query: 971 catcctacaagccagagctgctgaagcccctaatggaaaagatttcagctatcccagaag 1030
|| ||||||| || |||||||||||| | | | |||||||||||||| || |||||||
Sbjct: 995 cagcctacaaacctgagctgctgaagatcattgttgaaaagatttcagcaattccagaag 1054
Query: 1031 tggtaagcatcatgaataatgtaaattcctctgttggcaacacatctgttggagaggagg 1090
||||||| ||| |||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct: 1055 tggtaagtatcgtgaataatgtaaattcttctgttggcaacacatctgtgggggaggagg 1114
Query: 1091 aatacactttgtatggcaaatccaccatcacagaggtcttacgaggacttacctttcaaa 1150
|||||||| | ||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1115 aatacactatatatggaaaatccaccatcacagagatcttaagaggacttacctttcaaa 1174
Query: 1151 tttcagccaactctttctttcagacaaatacacatcaggcagaggttctgtacaaactta 1210
||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||| |
Sbjct: 1175 tttcagccaactctttctttcagacaaatactcgtcaggcagaggttctatataaactca 1234
Query: 1211 ttgaagattgtgctggtctcagaggagatggatcagaaattgttcttgacctattttgcg 1270
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct: 1235 ttgaagattgtgctggtctcagaggagatggctcagaaattgttcttgatttattttgtg 1294
Query: 1271 gaacgggcaccattggtctgactcttgccagaggggctaagcatgtttatggctatgaag 1330
| || |||||||||||| |||| |||||| | |||| || |||||||||||||||||||
Sbjct: 1295 gtactggcaccattggtttgacacttgccgggagggccaaacatgtttatggctatgaag 1354
Query: 1331 ttgttcctcaagcaatctcagatgcttttaggaatgccgagctgaatggcatcactaatg 1390
|||||||||||||||| ||||||||| || ||||| ||||||||||| ||||||||||
Sbjct: 1355 ttgttcctcaagcaatttcagatgctcgcagaaatgctgagctgaatggtatcactaatg 1414
Query: 1391 ccacatttgtgcaaggggatcttaacaaaattggtgaaaattttggcaacaatttcccaa 1450
| |||||||||||||| |||||||| || ||| |||| ||||||||||||||| ||||
Sbjct: 1415 ctacatttgtgcaaggagatcttaataagattagtgattcttttggcaacaattttccaa 1474
Query: 1451 agcctgatgttgtcatttcagatccaaatcgtcctggtatgcacatgaagttgattaaat 1510
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 agcctgacatagtcatttcagatccaaatcgtcctggtatgcacatgaagttgattaaat 1534
Query: 1511 ttctgttaaagcttaaggctcctcgtattgtttatgtatcatgtaatccagccacatgtg 1570
|| ||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 1535 ttttgttaaagcttaaagctccccgcattgtttatgtatcatgtaatccagctacatgtg 1594
Query: 1571 cacgtgacctcgattacctttgccatggtgtgaaagagcaaaatataaaaggatgttaca 1630
|||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 1595 cacgtgaccttgattatctttgccatggtgtggaagagcaaaacataaaaggatgttaca 1654
Query: 1631 aactaaaaagcctacagccggtggacatgtttcctcacacccctcacatagagtgtgttt 1690
|||| |||||||| || || |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1655 aacttaaaagcctgcaaccagtggacatgtttccccacacccctcacattgagtgtgttt 1714
Query: 1691 gcctgttagagctttgctga 1710
||||||||||||||||||||
Sbjct: 1715 gcctgttagagctttgctga 1734