Jatropha Genome Database
- JcCA0310551.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310551.10 + phase: 2 /pseudo/partial
(427 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30190.m010886 rab9 and, putative 496 e-140
30146.m003584 rab9 and, putative 153 1e-36
28644.m000913 rab9 and, putative 70 1e-11
>30190.m010886 rab9 and, putative
Length = 621
Score = 496 bits (250), Expect = e-140
Identities = 387/437 (88%), Gaps = 11/437 (2%)
Strand = Plus / Plus
Query: 1 atctgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggt 60
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 181 atctgggatacagctggccaggaaagattccagagtcttggtgttgctttctatcgtggt 240
Query: 61 gctgattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaat 120
|||||||| |||||||| ||||||||||||||||||||||| |||||||| || || ||
Sbjct: 241 gctgattgctgtgttctcgtatatgatgttaattcaatgaagtcatttgataaccttaac 300
Query: 121 aattggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccattt 180
|| ||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct: 301 aactggagagaagaattccttattcaggcaagtccttcagatccagagaatttcccattt 360
Query: 181 gttgttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagnnnnn 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttgttcttgggaacaagattgatgtggatggtggaaatagtagagtggtttcagaaaaa 420
Query: 241 nnggcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaa 300
||||||||| |||||||| || ||||||||||| |||||||||||||| || ||||||
Sbjct: 421 aaggcaagagcttggtgtgcatcaaaagggaatattccatactttgagacctctgccaaa 480
Query: 301 gaaggcatcaacgttgaagaagctttccaatgcattgcaaagaatgccctgaagagtggg 360
|||||||| || || |||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 481 gaaggcattaatgtggaagaagctttccaatgcatagcaaagaatgccctgttgagtggg 540
Query: 361 gaagaggaggagatat-----------accattgatgttggtaacagcagtcagcctagg 409
|||||||| ||||||| |||||||||||||| | ||||||||||||||||
Sbjct: 541 gaagaggaagagatatacttgccggacaccattgatgttggaaccagcagtcagcctagg 600
Query: 410 tcaactggatgtgagtg 426
||||||||||| |||||
Sbjct: 601 tcaactggatgcgagtg 617
>30146.m003584 rab9 and, putative
Length = 624
Score = 153 bits (77), Expect = 1e-36
Identities = 244/302 (80%)
Strand = Plus / Plus
Query: 4 tgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggtgct 63
||||||||||| || |||||||| || ||||| ||||| || |||||||| ||||||||
Sbjct: 184 tgggatactgccgggcaggaaaggtttcaaagccttggagtggctttctaccgtggtgcg 243
Query: 64 gattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaataat 123
|| || ||||||||||| |||||||| ||| ||||| |||||||| ||||| |||||
Sbjct: 244 gactgctgtgttcttgtgtatgatgtgaatgtcatgaagtcatttgataatcttaataac 303
Query: 124 tggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccatttgtt 183
||||||||||| || || || ||||| || || ||||| || ||||| |||||||||||
Sbjct: 304 tggagagaagagtttctgattcaggctagtccctctgaccctgagaacttcccatttgtg 363
Query: 184 gttcttggaaacaagattgatgtggatggtggaaatagtagagtggtttcagnnnnnnng 243
|| | || ||||| || ||||| |||||||| |||||| | |||||||||| |
Sbjct: 364 gtgttggggaacaaaatagatgttgatggtggcaatagtcgggtggtttcagagaagaag 423
Query: 244 gcaagagcgtggtgtgcctctaaagggaatataccatactttgagacttcagccaaagaa 303
|||| || |||||||| ||||| || || ||||| |||||||||||||| || ||||||
Sbjct: 424 gcaaaggcatggtgtgcttctaagggaaacataccttactttgagacttctgcaaaagaa 483
Query: 304 gg 305
||
Sbjct: 484 gg 485
>28644.m000913 rab9 and, putative
Length = 618
Score = 69.9 bits (35), Expect = 1e-11
Identities = 179/227 (78%)
Strand = Plus / Plus
Query: 4 tgggatactgctggccaggaaagattccaaagtcttggcgttgctttctatcgtggtgct 63
||||| || ||||| || |||||||| || |||||||| ||||| |||||| | || ||
Sbjct: 184 tgggacacggctggacaagaaagatttcagagtcttggagttgcattctatagaggggca 243
Query: 64 gattgttgtgttcttgtatatgatgttaattcaatgaaatcatttgacaatctcaataat 123
|||||||||||||| || || ||||||||| |||| |||||||||| ||| ||||
Sbjct: 244 gattgttgtgttctagtttacgatgttaatgttatgagatcatttgacgctcttgataac 303
Query: 124 tggagagaagaattcctcatacaggcaagcccttctgatccagagaatttcccatttgtt 183
||| || || || || | |||||||| ||| ||||||| ||| || |||||| |
Sbjct: 304 tggcatgaggagtttcttaaacaggcaaacccgcctgatcccaagacatttccatttata 363
Query: 184 gttcttggaaacaagattgatgtggatggtggaaatagtagagtggt 230
| || ||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 364 ctgctcggaaacaagattgatattgatggtggaaatagtcgagtggt 410