Jatropha Genome Database
- JcCA0310221.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310221.20 + phase: 0
(1575 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30128.m008684 shikimate dehydrogenase, putative 1403 0.0
29726.m003976 shikimate dehydrogenase, putative 98 2e-19
30128.m008686 shikimate dehydrogenase, putative 78 2e-13
>30128.m008684 shikimate dehydrogenase, putative
Length = 1575
Score = 1403 bits (708), Expect = 0.0
Identities = 1361/1576 (86%), Gaps = 2/1576 (0%)
Strand = Plus / Plus
Query: 1 atgtctgatcttcaactaagtaatagagaagttcaaagcagtcctactttgctatgtact 60
||||||||||||||||| |||||||| |||||| ||||| || ||||| |||||||||
Sbjct: 1 atgtctgatcttcaactgagtaatagttcagttcagagcagccccactttactatgtact 60
Query: 61 ccattaatgggaaccacagttgatcaaatgttgattgagatgcaaaaggctaaagaaatt 120
||||| ||||| || ||||||||||||||| || |||||||| |||||||| |||||
Sbjct: 61 ccattgatgggcactacagttgatcaaatgctgcttgagatgagaaaggctacggaaatc 120
Query: 121 ggtgctgacgttgtagaaatccggcttgactgcctcagaaactttagtcctacacaagat 180
||||||| ||||| ||||| ||||| || ||||| |||||| | | |||| ||||||
Sbjct: 121 agtgctgatgttgtcgaaattcggctagattgccttagaaacctcaatcctcgccaagat 180
Query: 181 cttgaaatcctcatcaaacgctctcccttgcccactctcgtcacttacaggccagtttgg 240
|||||||| ||||| || | ||||| | || || || ||||||||||| ||| |||||
Sbjct: 181 cttgaaattctcattaagcaatctcctctccctaccctggtcacttacagaccaatttgg 240
Query: 241 gaaggtggtcaatatgagggtgatgaaacaaaacgacaagatgcacttcgtttagcaatg 300
||||||||||| |||||||||||||| || || |||| ||||| |||||||| || |||
Sbjct: 241 gaaggtggtcagtatgagggtgatgagaccaagagacaggatgcgcttcgttttgctatg 300
Query: 301 caattgggtgctaattatgtggatgttgaacttgaggttgctcatgactttaatagttca 360
|| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| | |||
Sbjct: 301 cagttgggagctaattatgttgatgttgaacttgaggttgctcatgaatttaacaactca 360
Query: 361 atatacggaaagaagcctgataacttcagagtcattgtttcttctcacaattttcataat 420
||||| ||||||||||||||||| |||| ||| || |||||||||||||||||||| |||
Sbjct: 361 atatatggaaagaagcctgataatttcaaagttatcgtttcttctcacaattttcacaat 420
Query: 421 acaccatcagctgaggccattgccaatcttgttgcaagaatacaagctactggagctgac 480
|| ||||| ||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 421 actccatcttctgaggcaattgccaatcttgttgctagaattcaagctactggtgctgac 480
Query: 481 attatcaagattgcaacaactgcattagacattacagactgtgctcgcatttt-cagaat 539
||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct: 481 attgtcaagattgccacaactgcgttagacattacagactgtgctcgcatttttcagatt 540
Query: 540 catggttcactctcagattccagtaattggaattgttatgggtgagaggggacagatttc 599
||||| || | ||| | |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 541 -atggtgcattgccaggtcccagtaattggaattgttatgggtgaaaggggcttgatttc 599
Query: 600 gcggttgcttagccccaagtttggcgggtacctgacttatggtgctcttgaggcaggtgc 659
|||||| ||||||||||||||||| || || || ||||||||||| ||||||||||||||
Sbjct: 600 gcggttacttagccccaagtttggtggatatctcacttatggtgcgcttgaggcaggtgc 659
Query: 660 tatatcagctcctggacaaccaactgtaaaggatttgctggatttatacaactttagact 719
|||||| ||||| ||||| ||||||| ||||||||| |||||||||||||||| |||||
Sbjct: 660 tatatctgctccaggacagccaactgcaaaggatttattggatttatacaacttcagact 719
Query: 720 tataaggcctgataccaaagtttatggcattattgggaaacctgttggacatagcaagag 779
|||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct: 720 cataaggcctgatactaaagtgtatggcattatcgggaaacctgttggtcacagcaagag 779
Query: 780 tcctctcttgttcaatgcagcttttaaatctgtcggtcttaacgcagtttatatgcattt 839
||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct: 780 tcctctcttgttcaatgcagcatttaagtctgtcggtcttaatgcagtttacgtgcattt 839
Query: 840 tcttgtggatgatgtggagaaatttttcaacacctattcttctgttgattttgcttctgg 899
|||||| |||||||| ||||| ||||||| ||||||||| ||||||||||||||||| ||
Sbjct: 840 tcttgttgatgatgttgagaagtttttcagcacctattcatctgttgattttgcttcagg 899
Query: 900 atgcagttgcactattcctcataaggaagttgcacttaaatgcatggatgagattgaccc 959
|||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 900 atgcagctgtactattcctcataaggaggttgcacttaaatgcatggatgaaattgaccc 959
Query: 960 aattgctaggaaaattggagctatcaacaacattgtcaggagaccagatggaaccttgat 1019
|| || | |||||||||||| ||||| |||||| | |||||||| |||| |||||||||
Sbjct: 960 catcgccaagaaaattggagcaatcaataacattataaggagacctgatgcaaccttgat 1019
Query: 1020 ggcttataacactgactatatcggtgccatctctgccattgaggatggactaagagaatt 1079
||| || |||||||||||||| ||||| || ||| |||||||| ||||||||||||||
Sbjct: 1020 ggcatacaacactgactatattggtgctattgatgcaattgaggacggactaagagaatt 1079
Query: 1080 aaatggtgcagttcctgctggaacctcgcccttaaaaggtaaactctttgtggttctggg 1139
|| ||||||||||| || || ||||| || ||| |||||||| ||||||||| ||||
Sbjct: 1080 gaacggtgcagttccagcaggtacctcacctttagctggtaaactgtttgtggttttggg 1139
Query: 1140 agctggcggagctggtaagtcacttgcctatggcgctgcacaaaaaggagccagagttgt 1199
|||||| || ||||| ||||||||||| || || || |||||||||||||||||||||||
Sbjct: 1140 agctggtggtgctggcaagtcacttgcttacggtgccgcacaaaaaggagccagagttgt 1199
Query: 1200 agtcgccaatcgaacatatgaacgagcaaaggagttggccgataaagttggaggtcaagc 1259
|| ||||||||||||| ||||||||| |||||| |||| || |||||| ||||||||
Sbjct: 1200 tgttgccaatcgaacatttgaacgagctaaggagctggctgacaaagttaacggtcaagc 1259
Query: 1260 aatgacactagcagaagcagagcatttccatccagaagacggaatggttcttgcaaatac 1319
||||||||| | |||| | | ||||||| |||||||| ||||||||||||||||| ||
Sbjct: 1260 aatgacacttgacgaagtacaaaatttccacccagaagaaggaatggttcttgcaaacac 1319
Query: 1320 aacttctgttggaatgaaaccgaattatgatgctactccattaccaaagcatgtcttaaa 1379
|| |||||||||||||| || || |||||| |||||| || ||||||||| |||||
Sbjct: 1320 cacatctgttggaatgaagcctaacattgatgccactccactagcaaagcatgctttaaa 1379
Query: 1380 acattactgcctagcgtttgatgcgatttacacacctaaagacacaagactcttacgaga 1439
||| || ||| ||| |||||||| ||||||||||| |||||||||||||| || || ||
Sbjct: 1380 acactattgcgtagtctttgatgccatttacacaccgaaagacacaagactgttgcggga 1439
Query: 1440 agcgaaagaaagcggagctgtaattgtttatggaacggaaatgttaatccgtcaaggctt 1499
||||||||| || |||||||| |||||||| ||||| |||||||| ||||| || || ||
Sbjct: 1440 agcgaaagagagtggagctgtcattgtttacggaacagaaatgttgatccgccagggatt 1499
Query: 1500 tgaacaatacaagaacttcactggcttgcctgcaccagaagaattgttcaggcaactcat 1559
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct: 1500 tgaacaatacaagaacttcacaggcttgcctgcaccggaagaattgttcaggcaactgat 1559
Query: 1560 ggagaaacatgcataa 1575
||||||||||||||||
Sbjct: 1560 ggagaaacatgcataa 1575
>29726.m003976 shikimate dehydrogenase, putative
Length = 1620
Score = 97.6 bits (49), Expect = 2e-19
Identities = 120/141 (85%), Gaps = 2/141 (1%)
Strand = Plus / Plus
Query: 460 atacaagctactggagctgacattatcaagattgcaacaactgcattagacattacagac 519
||||||||| |||||||||| || | ||||||||||||||||| || || ||||| ||
Sbjct: 508 atacaagctgctggagctgatatagtgaagattgcaacaactgccttggatattactga- 566
Query: 520 tgtg-ctcgcattttcagaatcatggttcactctcagattccagtaattggaattgttat 578
|||| ||||||||||| ||| | |||||||||||| ||||| ||||||||||||||||
Sbjct: 567 tgtggctcgcattttccaaattactgttcactctcaggttccaataattggaattgttat 626
Query: 579 gggtgagaggggacagatttc 599
|||||| ||||| | ||||||
Sbjct: 627 gggtgaaaggggtctgatttc 647
>30128.m008686 shikimate dehydrogenase, putative
Length = 441
Score = 77.8 bits (39), Expect = 2e-13
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1242 taaagttggaggtcaagcaatgacactagcagaagcagagcatttccatccagaagacgg 1301
|||||||||||| ||||| ||||| ||||| ||| | |||||||||||||||| ||
Sbjct: 108 taaagttggaggacaagcgatgactctagctgaactgaaagatttccatccagaagaagg 167
Query: 1302 aatggttcttgcaaatacaacttctgttggaatgaaacc 1340
|||| |||||||||| || ||||| ||||||||||||||
Sbjct: 168 aatgattcttgcaaacaccacttcagttggaatgaaacc 206