Jatropha Genome Database
- JcCA0310141.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0310141.20 - phase: 2 /pseudo
(988 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29709.m001230 carrier, putative 585 e-166
>29709.m001230 carrier, putative
Length = 1008
Score = 585 bits (295), Expect = e-166
Identities = 595/695 (85%)
Strand = Plus / Plus
Query: 272 caggaactctctcactggaatgcccaatataaggaaaagtttggatttatatttcttata 331
||||| |||||| ||||||||||||| |||| | |||||||||||||| |||||||||||
Sbjct: 289 caggagctctctgactggaatgcccagtatatgcaaaagtttggatttgtatttcttata 348
Query: 332 tgtgcatcaggaaggagtactactgaaatacttgctgaattaaagaaacggtaccaaaac 391
||||| || ||| | |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 349 tgtgcttctggacgaagtacttctgaaatacttgctgaattaaagaaacggtacaaaaat 408
Query: 392 agacccatagttgaatttgagattgcagctcaagagcaaatgaaaataacagaactacgt 451
| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 aagcccatatttgagtttgagattgcagctcaagaacaaatgaaaataacagaactacgt 468
Query: 452 cttggaaagctcttctcaactaaaataaatgctgcttcaactggtaaccagcattccaca 511
||||||||||| ||||| |||||| |||| ||||||||||| | |||||| | ||||
Sbjct: 469 cttggaaagcttttctcgactaaattaaaagctgcttcaaccagcaaccagtgtcacaca 528
Query: 512 agttttggagcaaaagcagaagaagatcgtgtgggcattattggaggacatttgactgct 571
| |||| | |||||| |||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 529 aagtttgcaacaaaagtagaagaagatcgcatggctgttattggaggacatttaactgct 588
Query: 572 gctctcaacttttcatctggaaaggcatctcaaactccaactcgaacccgtccacccatt 631
| ||||| | | ||||| ||||||||||||| ||| || ||||| ||||||||||||
Sbjct: 589 gagctcaattccttgtctgggaaggcatctcaaattcccacccgaacacgtccacccatt 648
Query: 632 accactcatgtattggatgtttctcggggttgtccagctggcggtgttgaggtgtgtttg 691
|| |||||||| || ||| |||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 649 acaactcatgtcttagatatttctcggggctgtccagctgctggtattgaggtgtgtttg 708
Query: 692 gagatgtggaatggcactcaaccccgtccccttttcggtgagataggtgtagacagttgg 751
||||||||||| || | ||||| |||||| | || ||||||| || | |||| |||||
Sbjct: 709 gagatgtggaaggggatccaacctcgtcccttgtttggtgagacagatatagatggttgg 768
Query: 752 gtagttcagggggcttcaactacagatgctgacgggcgatgtggtcaactgatgagcatg 811
| | |||||||| |||||||||| ||||| || |||||| |||||||| |||||| ||
Sbjct: 769 gcatttcaggggtcttcaactactgatgcggatgggcgaagtggtcaattgatgaatatt 828
Query: 812 gttgatgttgtgaacccaggaatatacagaataagtttcaatacaggcaagtattgtcca 871
||| ||||||||||||| || ||||||||||| ||||||||||| |||||||| | ||||
Sbjct: 829 gttaatgttgtgaaccctggcatatacagaattagtttcaatacgggcaagtactttcca 888
Query: 872 tctgggttctttccttatgtttctattgtgtttgaaatcagagaggcacagaacagggaa 931
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||| | |||
Sbjct: 889 tctgggttctttccctatgtttctattgtgtttgaaatcagggagtcacagaatacagaa 948
Query: 932 cattttcatgttcctctgctattttcaccattctc 966
|| ||||||||||||||||| |||||||||||||
Sbjct: 949 cactttcatgttcctctgctgctttcaccattctc 983
Score = 75.8 bits (38), Expect = 4e-13
Identities = 126/157 (80%), Gaps = 10/157 (6%)
Strand = Plus / Plus
Query: 4 gcctccccttttacctccctcgatgaagctgtcgctgcagccagaaagatctggttcaac 63
|||||||||||||| |||||||| ||||| |||| ||| |||| ||| ||||||||||||
Sbjct: 79 gcctccccttttacttccctcgaagaagccgtcgatgccgccaaaaatatctggttcaac 138
Query: 64 aag----------atggttggctggaagcgttctcgtctcatcctcagatcggacaatcg 113
||| | |||||||||||||| ||||| | |||||||||||| || |||||
Sbjct: 139 aaggttgatgtgtacggttggctggaagcattctcatgtcatcctcagattgggcaatcc 198
Query: 114 ccttcttcccccgccgcttctcacactgctgctcagt 150
||||| || || ||| |||||||| ||||||||||
Sbjct: 199 ccttccaccgcccacgcctctcacaccgctgctcagt 235
Score = 67.9 bits (34), Expect = 1e-10
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 165 gtggagcaagggagagcaatcaactgctttagcaactgctactgattccagtttacag 222
|||||| ||||||||||| || |||||||||||||||||||| | |||||| ||||||
Sbjct: 234 gtggagtaagggagagcagtccactgctttagcaactgctacaggttccagcttacag 291