Jatropha Genome Database

JcCA0310021.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0310021.20 + phase: 1 /partial
         (713 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004542 hypothetical protein                                    232   2e-60
30128.m008988 conserved hypothetical protein                           84   1e-15

>30076.m004542 hypothetical protein
          Length = 1755

 Score =  232 bits (117), Expect = 2e-60
 Identities = 195/221 (88%)
 Strand = Plus / Plus

                                                                        
Query: 189  gttcatagtctgtctgaaaggaaaagaagacacaagatcaacaagaagatgcgcgaatta 248
            |||||||||||||||||||||||||||||  | |||||||||||||||||||| | ||||
Sbjct: 1150 gttcatagtctgtctgaaaggaaaagaagggataagatcaacaagaagatgcgtgcatta 1209

                                                                        
Query: 249  caagctctcctacctaattccgataaggtggataaagcttcagtgcttgataatgcaatc 308
            ||||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||| 
Sbjct: 1210 caagctctcatacctaattccgacaaggtggataaagcttcaatgcttgataaggcaatt 1269

                                                                        
Query: 309  gagtatctaaagacccttcagcttcaagtacagataatgtcaatgggaagtaggttttgg 368
            ||||||||||||||||||||||||||| | ||||| ||||||||| || | || | ||  
Sbjct: 1270 gagtatctaaagacccttcagcttcaactgcagatgatgtcaatgagaggcagctgttat 1329

                                                     
Query: 369  atgccacagatgatgttaccaaatgcaatgcaacagataca 409
            |||||||  |||||| |||||| |||| ||||||| |||||
Sbjct: 1330 atgccaccaatgatgataccaactgcattgcaacaaataca 1370


>30128.m008988 conserved hypothetical protein
          Length = 2277

 Score = 83.8 bits (42), Expect = 1e-15
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                        
Query: 271  ataaggtggataaagcttcagtgcttgataatgcaatcgagtatctaaagacccttcagc 330
            |||||||||| ||||||||| |||| ||| | || || |||||| ||||||| |||||||
Sbjct: 1487 ataaggtggacaaagcttcaatgctcgatgaggctattgagtatttaaagactcttcagc 1546

                                      
Query: 331  ttcaagtacagataatgtcaatggga 356
            ||||||| ||||| ||||||||||||
Sbjct: 1547 ttcaagtgcagattatgtcaatggga 1572