Jatropha Genome Database

JcCA0309961.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309961.30 - phase: 2 /pseudo/partial
         (280 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011101 homeobox protein knotted-1, putative                    155   2e-37
29848.m004577 homeobox protein knotted-1, putative                     60   7e-09

>30190.m011101 homeobox protein knotted-1, putative
          Length = 909

 Score =  155 bits (78), Expect = 2e-37
 Identities = 111/122 (90%)
 Strand = Plus / Plus

                                                                       
Query: 20  ggcacagtatttgatagtactgtgtagtttcaaggaccaacttcaacagcatgtcagagt 79
           ||||||||||||||||||| ||||||||||||| || |||||||| || |||||||||||
Sbjct: 324 ggcacagtatttgatagtattgtgtagtttcaaagatcaacttcagcaacatgtcagagt 383

                                                                       
Query: 80  ccacgcggttgaagcggtcatggcttgccgggaaattgagaacaccttacaagctctaac 139
           |||||| || ||||| |||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 384 ccacgccgtcgaagcagtcatggcctgccgggaaattgagaacactttacacgctctaac 443

             
Query: 140 tg 141
           ||
Sbjct: 444 tg 445



 Score =  115 bits (58), Expect = 1e-25
 Identities = 115/134 (85%)
 Strand = Plus / Plus

                                                                       
Query: 143 ctgcaaatggatttctctttagatcaaccaagtgttgatgggcatgacctcatgggattt 202
           ||||||||||||||||||||||||||| |  ||| |||||| ||||| || |||||||||
Sbjct: 499 ctgcaaatggatttctctttagatcaatccggtgctgatggccatgatcttatgggattt 558

                                                                       
Query: 203 ggtcccctgattccaacagaatctgaaaggtccttaatggagcgagttagacaagaattg 262
           ||||| ||| ||||||| || |||||||| ||| | |||||| ||||| | || ||||||
Sbjct: 559 ggtcctctgcttccaactgagtctgaaagatccctgatggagagagttcgtcaggaattg 618

                         
Query: 263 aagattgaattaaa 276
           ||||||||| ||||
Sbjct: 619 aagattgaactaaa 632


>29848.m004577 homeobox protein knotted-1, putative
          Length = 1371

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 193 catgggatttggtcccctgattccaacagaatctgaaaggtccttaatggagcg 246
           |||||||||||||||||| |||||||||||   ||| ||||| |||||||||||
Sbjct: 921 catgggatttggtcccctcattccaacagagagtgagaggtctttaatggagcg 974