Jatropha Genome Database

JcCA0309961.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309961.20 + phase: 0 /pseudo/partial
         (185 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011101 homeobox protein knotted-1, putative                    196   3e-50

>30190.m011101 homeobox protein knotted-1, putative
          Length = 909

 Score =  196 bits (99), Expect = 3e-50
 Identities = 126/135 (93%)
 Strand = Plus / Minus

                                                                       
Query: 50  gttgggtaaggccacttggagtgttgctgccaccaatttttaaggactgtggttgtatca 109
           |||||||| ||||| || |||||||||||||||||||| || |||||||||||||| |||
Sbjct: 767 gttgggtacggccatttcgagtgttgctgccaccaattcttcaggactgtggttgtgtca 708

                                                                       
Query: 110 cctggaagttttccagcccttctttttctcaagatttcttccctcacatcttcaattctt 169
           ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 707 cctggaagtttcccagcccttctttttcttaatatttcttccctcacatcttcaattctt 648

                          
Query: 170 gatttaaaaccctgc 184
           |||||||||||||||
Sbjct: 647 gatttaaaaccctgc 633