Jatropha Genome Database
- JcCA0309861.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0309861.20 - phase: 0
(1560 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30128.m008683 shikimate dehydrogenase, putative 1501 0.0
29647.m002035 shikimate dehydrogenase, putative 115 8e-25
>30128.m008683 shikimate dehydrogenase, putative
Length = 1560
Score = 1501 bits (757), Expect = 0.0
Identities = 1342/1537 (87%)
Strand = Plus / Plus
Query: 24 tagttctgcaatggtttgtgctccactaatggctcaatctgttgagcaaatggttaggga 83
|||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||| ||
Sbjct: 24 tagttctgtgatggtttgtactccactgatggctcaatctgttgagcaaatgattagtga 83
Query: 84 catgtacagtgcaaagtcacagggtgctgatgttgttgaggtcaggttggactacatcaa 143
|||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||| |
Sbjct: 84 catgtacaatgcaaagacacaaggtgctgatgttgttgaagtcaggttggactacatcga 143
Query: 144 gaactttcagcctggccaagaccttgaaaccatcctcagaaagaagcccttgccagtgat 203
||||| |||||| |||||||| || ||||||| ||||| ||||| |||| |||||
Sbjct: 144 caacttccagcctcctcaagacctccaagccatccttagaaataagccactgcctgtgat 203
Query: 204 tattgtgtatcggtcaaaatgtgaaggtggtctttttgaaggagatgagcacacgaggtt 263
|||||| |||||| |||||| ||||||||| | | |||||||||||||| ||| |||||
Sbjct: 204 tattgtatatcggccaaaatcagaaggtggtttgtatgaaggagatgagcccacaaggtt 263
Query: 264 ggaagtacttcgtttggctcatgaactgggagctgattatattgatttagaactcaaggt 323
||||| ||||||||||||| ||| ||| |||||||||||| ||||||| |||||||||||
Sbjct: 264 ggaagcacttcgtttggcttatgtactaggagctgattatgttgattttgaactcaaggt 323
Query: 324 ggcttctgatatgataggggaactgaaaaagacacatcaaactgatagcaaaattattgt 383
|||||||||| ||||||||||||||||| ||| ||||| |||| ||||||| |||||||
Sbjct: 324 ggcttctgatctgataggggaactgaaagggacgcatcatactggtagcaaagttattgt 383
Query: 384 atcatgttatctcactggtgcaacccctccaaaagaaaatcttagccatctggttgggag 443
|| |||||| | | ||||| | ||| ||||||||||||||||||| ||||||| ||
Sbjct: 384 gtcgtgttatgttaatggtgatatgcctacaaaagaaaatcttagccaactggttgcaag 443
Query: 444 catgcaagctgctggagcagatattatcaaacttgtttcaaatgcaaataatattacaga 503
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct: 444 catgcaagctactggagcagatattatcaaacttgtttccactgcaaataatattactga 503
Query: 504 actgcaaagaattttttatttgcttttacattctcaggtgccattaattgcatactctgt 563
| | | |||||||| || | | ||||||| |||||| ||| ||||||||||||||||
Sbjct: 504 attagatagaattttccatctaatcttacattgtcaggtaccaataattgcatactctgt 563
Query: 564 aggagaaagaggtctcataagccaaatattgtccccaaaatttggtggttctttagtcta 623
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 564 tggagaaagaggtctcataagccagttattgtccccaaaatttggtggttctttactcta 623
Query: 624 tggctccatagaaggaaatttgattcctggtctgcctactttagacagccttagagaagc 683
||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggatccatggaaggaagttccattcctggtctgcctactttagacagccttagagaagc 683
Query: 684 ctataaggttgagcgcatcaattcagatactaaagttttcggtctaatttctaaaccagt 743
||||||||||| ||| ||||||||||||||||| ||||||||| |||| ||||| ||
Sbjct: 684 ctataaggttgcatacataaattcagatactaaagtcttcggtctagtttcaaaaccggt 743
Query: 744 tggccacagcaaaggccccatattgcataatcctacattcagacatgtaaactataatgg 803
| ||||||||||||| ||| | |||||||||||||| |||||||||| ||||||||||||
Sbjct: 744 tagccacagcaaaggtcccttgttgcataatcctactttcagacatgcaaactataatgg 803
Query: 804 aatatatgtgcccatgtttgttgatgatctcaaggaattctttagtgtctactctagccc 863
| ||||| || ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 804 gacttatgtcccaatgtttgttgatgatctcaaggaattctttagtgtttattcaagccc 863
Query: 864 tgactatgccggttttagtgttggatttccatacaaggaagctgttgttgagttttgtga 923
||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 864 tgactttgctggttttagtgttggatttccatacaaggaagctgtggttgagttttgtga 923
Query: 924 tgaagttcatccacttgctaagtctataggtgcagttaacaccattgttaggaggcctag 983
||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct: 924 cgaagtccatccacttgctaagtctataggtgctgttaacaccattattaggaggcctgg 983
Query: 984 tgatgggaagctgataggttataatacagactgtgaggcttcgataactgcaattgagga 1043
|||||||||| |||| ||| ||||||| |||||||||||| | |||||||| ||||||||
Sbjct: 984 tgatgggaagttgattggtcataatacggactgtgaggctgcaataactgctattgagga 1043
Query: 1044 tgctctaaaagaacaaggttacatcaatggcagaacatctttcagctcttcattagctgg 1103
|||| | ||||||||||| ||||| ||||||||||||||| || |||| ||||| ||||
Sbjct: 1044 tgctttgaaagaacaaggatacatggatggcagaacatcttccaactctccattaactgg 1103
Query: 1104 aagacagtttgtgctagttggtgctggaggggcaggacgagcacttgcatttggtgctaa 1163
||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1104 aaggcagtttgtgcttgtgggtgctggaggggcaggaagagcacttgcatttggtgctaa 1163
Query: 1164 aagtagaggagcccgtataatcattttcgacattgactttgagagaacaaagtctttagc 1223
|||| ||||||||||||| | |||||||||||||| |||||||| |||||| ||||
Sbjct: 1164 aagtcgaggagcccgtattgttattttcgacattgatcttgagagagcaaagttcctagc 1223
Query: 1224 tcatgctgtttcgggtgaagctcagcctttcaaaaatctggttcattttcggccagaaac 1283
| |||||||||||||||| ||||||| ||| | || | ||| ||||| ||||| |
Sbjct: 1224 tgatgctgtttcgggtgaggctcagctttttgagaacgtagttaattttgaaccagagaa 1283
Query: 1284 tgacgctatccttgcgaatgcaacaccattggggatgcatccaaatacagagagaattcc 1343
|| || || ||||| |||||||||||| | || |||||||||||||| || ||||| ||
Sbjct: 1284 tggagcaattcttgcaaatgcaacaccaataggaatgcatccaaataccgaaagaatacc 1343
Query: 1344 tgtggccgaggaaactttgggaatctaccagctggtctttgatgctgtgtatacacctag 1403
|||||| |||| ||| ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 1344 tgtggctgaggcaaccttgggaatctatcagctggtctttgatgctgtctacacacctag 1403
Query: 1404 aaaaaccagactattaaaagaagctgaagcagcaggagcaatcatagtaagcggagtcga 1463
|||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct: 1404 aaaaaccagactattaaaagaagctgaagctgcaggggcaatcatagtgagtggagttga 1463
Query: 1464 aatgtttctcagacaggcaatcggccagttcaacctcttcacaggcagagaagcgccaga 1523
||||| |||||||||||||| |||||||||| |||||| || ||||||||||| |||
Sbjct: 1464 gatgttcctcagacaggcaatgggccagttcagcctctttactggcagagaagcaccaac 1523
Query: 1524 agatttcatgcgagagattgttttagccaagttctga 1560
||| || ||||| ||||||||||||||||||||||||
Sbjct: 1524 agaatttatgcgggagattgttttagccaagttctga 1560
>29647.m002035 shikimate dehydrogenase, putative
Length = 1548
Score = 115 bits (58), Expect = 8e-25
Identities = 160/194 (82%)
Strand = Plus / Plus
Query: 863 ctgactatgccggttttagtgttggatttccatacaaggaagctgttgttgagttttgtg 922
|||||| ||| ||||||||||||||| ||||| |||||||||| | || | ||||
Sbjct: 851 ctgactttgctggttttagtgttggaattccacacaaggaagcagcagtcagctgctgtg 910
Query: 923 atgaagttcatccacttgctaagtctataggtgcagttaacaccattgttaggaggccta 982
||||||| |||||||| |||||||| ||||| || || || || || || ||||| ||||
Sbjct: 911 atgaagtccatccactggctaagtccataggagctgtaaatactatagtaaggagaccta 970
Query: 983 gtgatgggaagctgataggttataatacagactgtgaggcttcgataactgcaattgagg 1042
|||||||||||| | |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 971 ctgatgggaagctagttggttataatacagattgtgaggcttctattactgcaatagagg 1030
Query: 1043 atgctctaaaagaa 1056
|||| |||| ||||
Sbjct: 1031 atgcactaagagaa 1044