Jatropha Genome Database

JcCA0309351.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309351.30 + phase: 0 /partial/short
         (129 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001573 40S ribosomal protein S25, putative                     161   1e-39
30155.m001596 40S ribosomal protein S25, putative                     115   6e-26
30131.m007059 40S ribosomal protein S25-1, putative                    62   8e-10

>30055.m001573 40S ribosomal protein S25, putative
          Length = 327

 Score =  161 bits (81), Expect = 1e-39
 Identities = 105/113 (92%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggatcaatggatccctagcacgccgagcaatcaaggatttgatggcaagaggttctatca 76
           |||||||||| || || ||||| ||||||||||||||| | ||||||||||| |||||||
Sbjct: 212 ggatcaatgggtctctcgcacggcgagcaatcaaggatctaatggcaagaggctctatca 271

                                                                
Query: 77  ggatgatatctgctcatgctagtcagcaaatttacaccagagccacaaatacc 129
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 272 ggatgatatctgctcatgctagtcagcaaatttacaccagagccaccaatacc 324


>30155.m001596 40S ribosomal protein S25, putative
          Length = 327

 Score =  115 bits (58), Expect = 6e-26
 Identities = 94/106 (88%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggatcaatggatccctagcacgccgagcaatcaaggatttgatggcaagaggttctatca 76
           |||| ||||| || ||||||||| |||||||||||||| |||||||  |||||||||| |
Sbjct: 212 ggataaatggctcactagcacgcagagcaatcaaggatctgatggccggaggttctatta 271

                                                         
Query: 77  ggatgatatctgctcatgctagtcagcaaatttacaccagagccac 122
           ||||| |||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 272 ggatggtatctgctcatgctagccagcaaatatacactagagccac 317


>30131.m007059 40S ribosomal protein S25-1, putative
          Length = 327

 Score = 61.9 bits (31), Expect = 8e-10
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                       
Query: 55  ttgatggcaagaggttctatcaggatgatatctgctcatgctagtcagcaaatttacacc 114
           ||||||||||||||||  ||||||||| ||||||| ||||| || ||||| || ||||| 
Sbjct: 250 ttgatggcaagaggtttgatcaggatggtatctgcacatgccagccagcagatctacact 309

                      
Query: 115 agagccacaaa 125
           || ||||||||
Sbjct: 310 agggccacaaa 320