Jatropha Genome Database

JcCA0309311.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309311.20 - phase: 0 
         (348 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29977.m000249 DNA binding protein, putative                           105   2e-22

>29977.m000249 DNA binding protein, putative
          Length = 705

 Score =  105 bits (53), Expect = 2e-22
 Identities = 253/317 (79%), Gaps = 2/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 28  acaggtcgcaaattcaggtccaagagagaggttcagtattatctggaaactggaactctg 87
           |||||||| | |||||||||||||| |||||| ||||||| ||||||||| ||||||   
Sbjct: 385 acaggtcgtagattcaggtccaagaaagaggtgcagtattttctggaaacaggaactaaa 444

                                                                       
Query: 88  aagaagagaaagaaaggagctgagagttctgaagctgatgttaatccaccagagaattcc 147
           ||||||| ||| | ||||   |||| |||||| |  ||||| |||    |||||| | ||
Sbjct: 445 aagaagacaaaaagaggaatggagaattctgagggagatgtaaattttacagagagtccc 504

                                                                       
Query: 148 gggagtcaaaacaacaagaaggctgccaagaatgcaaaaggttctataatgaaa-tttga 206
           |||||||||||   |||||||||    ||||||||||| ||| | | || | || |||||
Sbjct: 505 gggagtcaaaaatccaagaaggccagtaagaatgcaaa-ggtccaaaaaaggaactttga 563

                                                                       
Query: 207 ttatttgaatgtacctgataagatcgaatgggctcttacggttgctaatgaagatgcatg 266
           |||||||||||| ||||||| ||| |||||||||||||  | ||| ||| ||||||| ||
Sbjct: 564 ttatttgaatgtgcctgataggattgaatgggctcttatagatgcaaatcaagatgcctg 623

                                                                       
Query: 267 gacccccttcactggagggtctaaggtgcctgaatatgagaggcagagttgggaatttga 326
           ||| ||||||  ||||||    |||||| |||||||||| ||||| |  ||||| |||||
Sbjct: 624 gactcccttccttggaggtcaaaaggtggctgaatatgacaggcaaaactgggactttga 683

                            
Query: 327 gatgatgcatttccatc 343
           |||| ||||||| ||||
Sbjct: 684 gatgctgcatttgcatc 700