Jatropha Genome Database

JcCA0309221.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309221.20 + phase: 0 /partial
         (535 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008740 conserved hypothetical protein                          264   5e-70

>30128.m008740 conserved hypothetical protein
          Length = 1203

 Score =  264 bits (133), Expect = 5e-70
 Identities = 351/423 (82%), Gaps = 3/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 113 tttcctcaacttccattcttataattatcttatcaatcatctctgttattgtactacttg 172
           ||||||||||||||||||| || |||||| | ||   ||||| ||  |||||| | ||||
Sbjct: 116 tttcctcaacttccattctcatcattatcatctctgccatctgtgccattgtaattcttg 175

                                                                       
Query: 173 caatcttactaattatagtcatgcttagaagactcaaatctgctaaaaacacaagcagct 232
           | |||||  |  ||||||| ||||||| |||||||||||||||||||||   |||||| |
Sbjct: 176 ctatctttatgcttatagtgatgcttaaaagactcaaatctgctaaaaatgtaagcagtt 235

                                                                       
Query: 233 ccgttaaagacaactgcagcattaacaacgctagttgcaggttcattgctcacagcacca 292
           ||   ||||||||  ||||||||||||||   | |||  ||||  ||||| | | |||  
Sbjct: 236 cc---aaagacaatagcagcattaacaacaaaacttgttggtttgttgctgataccactg 292

                                                                       
Query: 293 taactttcacttctagcccagatgtgaagggaggctgcctgtatggaagcaatttgagtc 352
           |||  || |||||||||||||||||||| | ||| || || |||||||||||| ||||||
Sbjct: 293 taagctttacttctagcccagatgtgaaagaagggtgtctatatggaagcaatatgagtc 352

                                                                       
Query: 353 aaaaaccaccaagaaaatacaaaggagttcaagttttcacatacaaagagcttgaagtgg 412
           ||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 353 aaaaacctccaagaaaacacaaaggagtccaagttttcacatacaaggagcttgaagtag 412

                                                                       
Query: 413 caacagaaagatttagtgaagcaaatgtgatcggcaatggaggttatggagtggtgtata 472
           | ||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 413 ctacagacagattcagtgaagcaaatgtgataggaaatggaggttatggagttgtgtata 472

                                                                       
Query: 473 aaggtattctagcagatggtacagttgctgccgttaagatgctacgtagagaaggaaagc 532
           || || | || |||||||||||  | |||||| |||||||| | || |||||||||||||
Sbjct: 473 aaagtgtcctcgcagatggtactttggctgccattaagatgtttcgaagagaaggaaagc 532

              
Query: 533 aag 535
           |||
Sbjct: 533 aag 535