Jatropha Genome Database

JcCA0309211.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309211.20 + phase: 1 /partial/short
         (137 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002012 NAC domain-containing protein, putative                 125   7e-29
30111.m000742 NAC domain-containing protein, putative                  54   2e-07

>29648.m002012 NAC domain-containing protein, putative
          Length = 1110

 Score =  125 bits (63), Expect = 7e-29
 Identities = 114/131 (87%)
 Strand = Plus / Minus

                                                                       
Query: 7   tcccatgggtcgaacttgtagagatcgatttcggcgattatcggaacagcgattgtctga 66
           |||||||||||| ||||||| ||||||||||| || || || |||||||| ||   ||| 
Sbjct: 386 tcccatgggtcgtacttgtacagatcgatttcagcaataataggaacagcaatctgctgc 327

                                                                       
Query: 67  gatgcgcatttacggcagagatagtgcatcacaagctcctcatcggttggatgaaacctg 126
           || |||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 326 gacgcgcatttacggcaaaggtagtgcatcacaagctcctcatccgttggatggaacctg 267

                      
Query: 127 aatcctggtgg 137
           ||||| |||||
Sbjct: 266 aatcccggtgg 256


>30111.m000742 NAC domain-containing protein, putative
          Length = 1011

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 100 agctcctcatcggttggatgaaacctgaatcctgg 134
           ||||||||||| | |||||||||||||||||||||
Sbjct: 65  agctcctcatcagatggatgaaacctgaatcctgg 31