Jatropha Genome Database

JcCA0309091.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0309091.10 + phase: 2 /partial
         (1666 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29910.m000944 Terpinolene synthase, chloroplast precursor, putative    82   1e-14
30169.m006276 Casbene synthase, chloroplast precursor, putative        62   1e-08
30065.m001155 casbene synthase, putative                               60   5e-08

>29910.m000944 Terpinolene synthase, chloroplast precursor, putative
          Length = 1431

 Score = 81.8 bits (41), Expect = 1e-14
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 772 gtggtggaaagaaataaatattacggagaaacttccatatgcaagagagagaattgt 828
           |||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||
Sbjct: 537 gtggtggaaagatataaatcttacggagaaacttccatatacaagagacagaattgt 593



 Score = 63.9 bits (32), Expect = 3e-09
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 924 tggatgatacatatgattcttatggtacatttgaagaact 963
           ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 689 tggatgatacatatgattcatatggtacatttgatgaact 728


>30169.m006276 Casbene synthase, chloroplast precursor, putative
          Length = 1845

 Score = 61.9 bits (31), Expect = 1e-08
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                       
Query: 332 tacgatatctacacagtggcgcttctatttcgagttttaagacaacatgggttccaagtg 391
           |||||| |||| || || || ||| ||||||||||||| ||||| ||||| ||| || ||
Sbjct: 460 tacgatctctatactgttgcacttgtatttcgagttttcagacagcatggtttcaaaatg 519

                                                          
Query: 392 ccttgtaatgtgtttcaaaaattcaaggacagcgaaggaaaattcaa 438
            ||| ||||||||| || ||||||| ||||||| | || ||||||||
Sbjct: 520 tcttctaatgtgttccacaaattcacggacagccatggtaaattcaa 566


>30065.m001155 casbene synthase, putative
          Length = 471

 Score = 60.0 bits (30), Expect = 5e-08
 Identities = 78/94 (82%)
 Strand = Plus / Plus

                                                                       
Query: 690 atgaaactttacttaagtttgcaaagttagattataatcgactccaattactatacaaac 749
           |||||||| | ||||||||||||||||| |||| ||||||  | |||||| | |||||||
Sbjct: 194 atgaaactctccttaagtttgcaaagttggattttaatcggttacaattattgtacaaac 253

                                             
Query: 750 aagagttaggcattgtctccaggtggtggaaaga 783
           ||||| ||| |  | |||| | ||||||||||||
Sbjct: 254 aagagctagcctctctctcaaagtggtggaaaga 287